Download MendeleyCrystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (Lattice Translocation Disorder)
Liu, L., Lovell, S., Battaile, K.P., Cooper, A.To be published.
8SKF
Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (Lattice Translocation Disorder)
- PDB DOI: https://doi.org/10.2210/pdb8SKF/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Klebsiella aerogenes
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2023-04-19 Released: 2023-04-26
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), National Institutes of Health/Office of the Director
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.207
- R-Value Work: 0.174
- R-Value Observed: 0.176
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Betaine aldehyde dehydrogenase | A, B | 499 | Klebsiella aerogenes | Mutation(s): 2 Gene Names: betB_3, betB, NCTC10006_04123 EC: 1.2.1.8 |  |
UniProt | |||||
Find proteins for A0A447LC14 (Klebsiella aerogenes) Explore A0A447LC14 Go to UniProtKB: A0A447LC14 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A447LC14 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD (Subject of Investigation/LOI) Query on NAD | D [auth A], I [auth B] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | Ligand Interaction | |
| PG4 Query on PG4 | G [auth A], H [auth A], L [auth B], M [auth B] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | Ligand Interaction | |
| GOL Query on GOL | C [auth A], E [auth A], J [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| CA Query on CA | F [auth A], K [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.207
- R-Value Work: 0.174
- R-Value Observed: 0.176
- Space Group: C 2 2 21
- Diffraction Data: https://doi.org/10.18430/M38SKF
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 85.822 | α = 90 |
| b = 184.823 | β = 90 |
| c = 163.066 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| XDS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-04-26 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700059C |
| National Institutes of Health/Office of the Director | United States | S10OD030394 |
Revision History (Full details and data files)
- Version 1.0: 2023-04-26
Type: Initial release
