8SH7 | pdb_00008sh7

TUBB4B and TUBA1A Heterodimer from Human Respiratory Doublet Microtubules

  • Classification: STRUCTURAL PROTEIN
  • Organism(s): Homo sapiens
  • Mutation(s): No 

  • Deposited: 2023-04-13 Released: 2024-05-01 
  • Deposition Author(s): Anderson, J.R., Gui, M., Brown, A.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI), The Pew Charitable Trusts

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Ciliopathy patient variants reveal organelle-specific functions for TUBB4B in axonemal microtubules.

Dodd, D.O.Mechaussier, S.Yeyati, P.L.McPhie, F.Anderson, J.R.Khoo, C.J.Shoemark, A.Gupta, D.K.Attard, T.Zariwala, M.A.Legendre, M.Bracht, D.Wallmeier, J.Gui, M.Fassad, M.R.Parry, D.A.Tennant, P.A.Meynert, A.Wheway, G.Fares-Taie, L.Black, H.A.Mitri-Frangieh, R.Faucon, C.Kaplan, J.Patel, M.McKie, L.Megaw, R.Gatsogiannis, C.Mohamed, M.A.Aitken, S.Gautier, P.Reinholt, F.R.Hirst, R.A.O'Callaghan, C.Heimdal, K.Bottier, M.Escudier, E.Crowley, S.Descartes, M.Jabs, E.W.Kenia, P.Amiel, J.Bacci, G.M.Calogero, C.Palazzo, V.Tiberi, L.Blumlein, U.Rogers, A.Wambach, J.A.Wegner, D.J.Fulton, A.B.Kenna, M.Rosenfeld, M.Holm, I.A.Quigley, A.Hall, E.A.Murphy, L.C.Cassidy, D.M.von Kriegsheim, A.Papon, J.F.Pasquier, L.Murris, M.S.Chalmers, J.D.Hogg, C.Macleod, K.A.Urquhart, D.S.Unger, S.Aitman, T.J.Amselem, S.Leigh, M.W.Knowles, M.R.Omran, H.Mitchison, H.M.Brown, A.Marsh, J.A.Welburn, J.P.I.Ti, S.C.Horani, A.Rozet, J.M.Perrault, I.Mill, P.

(2024) Science 384: eadf5489-eadf5489

  • DOI: https://doi.org/10.1126/science.adf5489
  • Primary Citation of Related Structures:  
    8SH7

  • PubMed Abstract: 

    Tubulin, one of the most abundant cytoskeletal building blocks, has numerous isotypes in metazoans encoded by different conserved genes. Whether these distinct isotypes form cell type- and context-specific microtubule structures is poorly understood. Based on a cohort of 12 patients with primary ciliary dyskinesia as well as mouse mutants, we identified and characterized variants in the TUBB4B isotype that specifically perturbed centriole and cilium biogenesis. Distinct TUBB4B variants differentially affected microtubule dynamics and cilia formation in a dominant-negative manner. Structure-function studies revealed that different TUBB4B variants disrupted distinct tubulin interfaces, thereby enabling stratification of patients into three classes of ciliopathic diseases. These findings show that specific tubulin isotypes have distinct and nonredundant subcellular functions and establish a link between tubulinopathies and ciliopathies.


  • Organizational Affiliation
    • MRC Human Genetics Unit, MRC Institute of Genetics and Cancer, University of Edinburgh, Edinburgh EH4 2XU, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin alpha-1A chain451Homo sapiensMutation(s): 0 
EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for Q71U36 (Homo sapiens)
Explore Q71U36 
Go to UniProtKB:  Q71U36
PHAROS:  Q71U36
GTEx:  ENSG00000167552 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ71U36
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin beta-4B chain445Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P68371 (Homo sapiens)
Explore P68371 
Go to UniProtKB:  P68371
PHAROS:  P68371
GTEx:  ENSG00000188229 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP68371
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States5R01GM141109
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United States5F30HL162128
The Pew Charitable TrustsUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-01
    Type: Initial release
  • Version 1.1: 2024-11-20
    Changes: Data collection, Database references, Structure summary