8SFT | pdb_00008sft

Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with kaempferol

PDB DOI: https://doi.org/10.2210/pdb8SFT/pdb

Classification: TRANSFERASE
Organism(s): Tetranychus urticae
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-04-11 Released: 2024-04-17
Deposition Author(s): Arriaza, R.H., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.
Funding Organization(s): National Institute of Food and Agriculture (NIFA, United States)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free:
0.232 (Depositor), 0.228 (DCC)
R-Value Work:
0.192 (Depositor), 0.192 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of TuUGT202A2 (Tetur22g00270) in complex with kaempferol

Arriaza, R.H., Dermauw, W., Wybouw, N., Van Leeuwen, T., Chruszcz, M.

To be published.

Macromolecule Content

Total Structure Weight: 199.81 kDa
Atom Count: 13,578
Modeled Residue Count: 1,698
Deposited Residue Count: 1,748
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UDP-glycosyltransferase 202A2	A, B, C, D	437	Tetranychus urticae	Mutation(s): 0 Gene Names: 107367435, UGT202A2
UniProt
Find proteins for T1KUK4 (Tetranychus urticae) Explore T1KUK4 Go to UniProtKB: T1KUK4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	T1KUK4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
UDP (Subject of Investigation/LOI) Query on UDP Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain Q [auth B] SDF format, chain Y [auth C] SDF format, chain Z [auth D] MOL2 format, chain E [auth A] MOL2 format, chain Q [auth B] MOL2 format, chain Y [auth C] MOL2 format, chain Z [auth D] mmCIF format, chain E [auth A] mmCIF format, chain Q [auth B] mmCIF format, chain Y [auth C] mmCIF format, chain Z [auth D]	E [auth A], Q [auth B], Y [auth C], Z [auth D]	URIDINE-5'-DIPHOSPHATE C₉ H₁₄ N₂ O₁₂ P₂ XCCTYIAWTASOJW-XVFCMESISA-N		Interactions Focus chain E [auth A] Focus chain Q [auth B] Focus chain Y [auth C] Focus chain Z [auth D] Interactions & Density Focus chain E [auth A] Focus chain Q [auth B] Focus chain Y [auth C] Focus chain Z [auth D]
KMP (Subject of Investigation/LOI) Query on KMP Download:Ideal Coordinates CCD File SDF format, chain X [auth C] SDF format, chain P [auth B] SDF format, chain F [auth A] MOL2 format, chain X [auth C] MOL2 format, chain P [auth B] MOL2 format, chain F [auth A] mmCIF format, chain X [auth C] mmCIF format, chain P [auth B] mmCIF format, chain F [auth A]	F [auth A], P [auth B], X [auth C]	3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE C₁₅ H₁₀ O₆ IYRMWMYZSQPJKC-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain P [auth B] Focus chain X [auth C] Interactions & Density Focus chain F [auth A] Focus chain P [auth B] Focus chain X [auth C]
SO4 (Subject of Investigation/LOI) Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain R [auth B] MOL2 format, chain G [auth A] MOL2 format, chain R [auth B] mmCIF format, chain G [auth A] mmCIF format, chain R [auth B]	G [auth A], R [auth B]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth A] Focus chain R [auth B] Interactions & Density Focus chain G [auth A] Focus chain R [auth B]
UNL( Subject of Investigation/LOI) Query on UNL Download:Ideal Coordinates CCD File	H [auth A] I [auth A] J [auth A] K [auth A] L [auth A] H [auth A], I [auth A], J [auth A], K [auth A], L [auth A], M [auth A], N [auth A], O [auth A], S [auth B], T [auth B], U [auth B], V [auth B], W [auth B]	Unknown ligand QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain L [auth A] Focus chain M [auth A] Focus chain N [auth A] Focus chain O [auth A] Focus chain S [auth B] Focus chain T [auth B] Focus chain U [auth B] Focus chain V [auth B] Focus chain W [auth B] Interactions & Density Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain L [auth A] Focus chain M [auth A] Focus chain N [auth A] Focus chain O [auth A] Focus chain S [auth B] Focus chain T [auth B] Focus chain U [auth B] Focus chain V [auth B] Focus chain W [auth B]