Download MendeleyCrystal structure of Cy137C02, a monoclonal antibody isolated from macaques immunized with an Epstein-Barr virus glycoprotein 350 (gp350) nanoparticle vaccine
Joyce, M.G., Jensen, J.L., Chen, W.H., Kanekiyo, M.To be published.
8SEF
Crystal structure of Cy137C02, a monoclonal antibody isolated from macaques immunized with an Epstein-Barr virus glycoprotein 350 (gp350) nanoparticle vaccine
- PDB DOI: https://doi.org/10.2210/pdb8SEF/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Macaca fascicularis
- Expression System: Homo sapiens
- Mutation(s): No
- Deposited: 2023-04-09 Released: 2024-04-17
- Funding Organization(s): Department of Defense (DOD, United States)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.47 Å
- R-Value Free: 0.264
- R-Value Work: 0.222
- R-Value Observed: 0.227
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cy137C02 Fab heavy chain | A [auth H] | 223 | Macaca fascicularis | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cy137C02 Fab light chain | B [auth L] | 215 | Macaca fascicularis | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth H] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | D [auth H] E [auth H] F [auth H] G [auth L] H [auth L] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.47 Å
- R-Value Free: 0.264
- R-Value Work: 0.222
- R-Value Observed: 0.227
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 145.389 | α = 90 |
| b = 67.125 | β = 106.01 |
| c = 50.244 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-04-17 Deposition Author(s): Joyce, M.G., Jensen, J.L., Chen, W.H., Kanekiyo, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Department of Defense (DOD, United States) | United States | W81XWH-18-2-0040 |
Revision History (Full details and data files)
- Version 1.0: 2024-04-17
Type: Initial release
