8S6Y | pdb_00008s6y

Co-crystal structure of TEAD1 with OPN-9652


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 
    0.258 (Depositor), 0.263 (DCC) 
  • R-Value Work: 
    0.223 (Depositor), 0.226 (DCC) 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 8S6Y

Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history

Literature

Targeting TAZ-TEAD in minimal residual disease enhances the duration of targeted therapy in melanoma models.

Ott, C.A.Purwin, T.J.Chen, P.Y.Chowdhury, S.Mellor, G.L.Luo, K.Mersky, G.L.Tiago, M.Madden, W.D.Varney, S.D.Erkes, D.A.Lamar, J.Capparelli, C.Bollag, G.Aplin, A.E.

(2025) Nat Commun 16: 9655-9655

  • DOI: https://doi.org/10.1038/s41467-025-64682-7
  • Primary Citation Related Structures: 
    8S6Y

  • PubMed Abstract: 

    Targeted therapies in cancer are limited by cells exhibiting drug tolerance. We aimed to target drug tolerance in order to delay the development of acquired resistance. In melanoma, tolerance to MAPK pathway inhibitors is associated with loss of SOX10 and an enhanced TEAD transcriptional program. We show that loss of SOX10 is sufficient to up-regulate TEAD targets with dependence on the co-activator, TAZ. Active TAZ is sufficient to mediate tolerance to BRAF inhibitors and MEK inhibitors. We develop two covalent inhibitors, OPN-9643 and OPN-9652, designed to target the central palmitate binding pocket of TEADs. In SOX10-deficient cells, OPN-9643 and OPN-9652 reduce TEAD-dependent reporter activity and expression of TEAD targets, CTGF and CYR61. OPN-9643 and OPN-9652 treatment enhances the inhibitory effects of MAPK-targeted therapies in 2D and 3D growth assays in SOX10 knockout cells and reverses tolerance mediated by active TAZ. In vivo, OPN-9652 delays the onset of acquired resistance to BRAF inhibitors and MEK inhibitors from minimal residual disease. Thus, TAZ-TEAD activity plays an important role in melanoma drug tolerance and the development of acquired resistance.


  • Organizational Affiliation
    • Department of Pharmacology, Physiology, and Cancer Biology, Thomas Jefferson University, Philadelphia, PA, 19107, USA.

Macromolecule Content 

  • Total Structure Weight: 104.63 kDa 
  • Atom Count: 8,177 
  • Modeled Residue Count: 856 
  • Deposited Residue Count: 868 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcriptional enhancer factor TEF-1A [auth AAA],
B [auth BBB],
C [auth CCC],
D [auth DDD]
217Homo sapiensMutation(s): 0 
Gene Names: TEAD1TCF13TEF1
UniProt & NIH Common Fund Data Resources
Find proteins for P28347 (Homo sapiens)
Explore P28347 
Go to UniProtKB:  P28347
PHAROS:  P28347
GTEx:  ENSG00000187079 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP28347
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
A1H5I
(Subject of Investigation/LOI)

Query on A1H5I



Download:Ideal Coordinates CCD File
BA [auth CCC],
E [auth AAA],
OA [auth DDD],
Q [auth BBB]
1-[7-[3-fluoranyl-4-(trifluoromethyl)phenoxy]-3,4-dihydro-1~{H}-isoquinolin-2-yl]propan-1-one
C19 H17 F4 N O2
DTKJDFBXPMKXOJ-UHFFFAOYSA-N
PEG

Query on PEG



Download:Ideal Coordinates CCD File
RA [auth DDD],
X [auth BBB]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
SO4

Query on SO4



Download:Ideal Coordinates CCD File
FA [auth CCC]
G [auth AAA]
GA [auth CCC]
H [auth AAA]
HA [auth CCC]
FA [auth CCC],
G [auth AAA],
GA [auth CCC],
H [auth AAA],
HA [auth CCC],
J [auth AAA],
N [auth AAA],
SA [auth DDD],
TA [auth DDD],
U [auth BBB],
V [auth BBB],
W [auth BBB]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
GOL

Query on GOL



Download:Ideal Coordinates CCD File
O [auth AAA]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
EDO

Query on EDO



Download:Ideal Coordinates CCD File
AA [auth BBB]
CA [auth CCC]
DA [auth CCC]
EA [auth CCC]
F [auth AAA]
AA [auth BBB],
CA [auth CCC],
DA [auth CCC],
EA [auth CCC],
F [auth AAA],
I [auth AAA],
IA [auth CCC],
JA [auth CCC],
K [auth AAA],
KA [auth CCC],
L [auth AAA],
LA [auth CCC],
M [auth AAA],
MA [auth CCC],
NA [auth CCC],
P [auth AAA],
PA [auth DDD],
QA [auth DDD],
R [auth BBB],
S [auth BBB],
T [auth BBB],
Y [auth BBB],
Z [auth BBB]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free:  0.258 (Depositor), 0.263 (DCC) 
  • R-Value Work:  0.223 (Depositor), 0.226 (DCC) 
Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 120.957α = 90
b = 120.957β = 90
c = 155.52γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
autoPROCdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data

  • Released Date: 2025-07-30 
  • Deposition Author(s): Aplin, A.E.

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-30
    Type: Initial release
  • Version 1.1: 2025-11-26
    Changes: Database references