8RRI | pdb_00008rri

Human mitochondrial ribosome in complex with antibiotic tigecycline


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

T cell toxicity induced by tigecycline binding to the mitochondrial ribosome.

Shao, Q.Khawaja, A.Nguyen, M.D.Singh, V.Zhang, J.Liu, Y.Nordin, J.Adori, M.Axel Innis, C.Castro Dopico, X.Rorbach, J.

(2025) Nat Commun 16: 4080-4080

  • DOI: https://doi.org/10.1038/s41467-025-59388-9
  • Primary Citation of Related Structures:  
    8RRI

  • PubMed Abstract: 

    Tetracyclines are essential bacterial protein synthesis inhibitors under continual development to combat antibiotic resistance yet suffer from unwanted side effects. Mitoribosomes - responsible for generating oxidative phosphorylation (OXPHOS) subunits - share structural similarities with bacterial machinery and may suffer from cross-reactivity. Since lymphocytes rely upon OXPHOS upregulation to establish immunity, we set out to assess the impact of ribosome-targeting antibiotics on human T cells. We find tigecycline, a third-generation tetracycline, to be the most cytotoxic compound tested. In vitro, 5-10 μM tigecycline inhibits mitochondrial but not cytosolic translation, mitochondrial complex I, III and IV expression, and curtails the activation and expansion of unique T cell subsets. By cryo-EM, we find tigecycline to occupy three sites on T cell mitoribosomes. In addition to the conserved A-site found in bacteria, tigecycline also attaches to the peptidyl transferase center of the large subunit. Furthermore, a third, distinct binding site on the large subunit, aligns with helices analogous to those in bacteria, albeit lacking methylation in humans. The data provide a mechanism to explain part of the anti-inflammatory effects of these drugs and inform antibiotic design.


  • Organizational Affiliation
    • Department of Urology, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.

Macromolecules

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L2, mitochondrialB [auth D]305Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000112651 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L3, mitochondrialC [auth E]348Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000114686 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L4, mitochondrialD [auth F]311Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000105364 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L9, mitochondrialE [auth H]267Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000143436 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L11, mitochondrialF [auth J]192Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000174547 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL13mG [auth K]178Homo sapiensMutation(s): 1 
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GTEx:  ENSG00000172172 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L14, mitochondrialH [auth L]145Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000180992 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L15, mitochondrialI [auth M]296Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000137547 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L16, mitochondrialJ [auth N]251Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000166902 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L17, mitochondrialK [auth O]175Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000158042 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L18, mitochondrialL [auth P]180Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000112110 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L19, mitochondrialM [auth Q]292Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000115364 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L20, mitochondrialN [auth R]149Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000242485 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L21, mitochondrialO [auth S]205Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000197345 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L22, mitochondrialP [auth T]206Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000082515 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL23mQ [auth U]153Homo sapiensMutation(s): 1 
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GTEx:  ENSG00000214026 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L24, mitochondrialR [auth V]216Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000143314 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L27, mitochondrialS [auth W]148Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000108826 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L28, mitochondrialT [auth X]256Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000086504 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L47, mitochondrialU [auth Y]250Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000136522 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L30, mitochondrialV [auth Z]161Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000185414 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L32, mitochondrialW [auth 0]188Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000106591 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L33, mitochondrialX [auth 1]65Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000243147 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L34, mitochondrialY [auth 2]92Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000130312 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L35, mitochondrialZ [auth 3]188Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000132313 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L36, mitochondrialAA [auth 4]103Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000171421 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L1, mitochondrialBA [auth z]325Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000169288 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L37, mitochondrialCA [auth 5]423Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000116221 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L38, mitochondrialDA [auth 6]380Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000204316 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L39, mitochondrialEA [auth 7]338Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000154719 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L40, mitochondrialFA [auth 8]206Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000185608 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L41, mitochondrialGA [auth 9]137Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000182154 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L42, mitochondrialHA [auth a]142Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000198015 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L43, mitochondrialIA [auth b]215Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000055950 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L44, mitochondrialJA [auth c]332Homo sapiensMutation(s): 0 
EC: 3.1.26
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GTEx:  ENSG00000135900 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L45, mitochondrialKA [auth d]306Homo sapiensMutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L46, mitochondrialLA [auth e]279Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000259494 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L48, mitochondrialMA [auth f]212Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000175581 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L49, mitochondrialNA [auth g]166Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000149792 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L50, mitochondrialOA [auth h]158Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000136897 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L51, mitochondrialPA [auth i]128Homo sapiensMutation(s): 0 
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Find proteins for Q4U2R6 (Homo sapiens)
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GTEx:  ENSG00000111639 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L52, mitochondrialQA [auth j]123Homo sapiensMutation(s): 0 
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Find proteins for Q86TS9 (Homo sapiens)
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GTEx:  ENSG00000172590 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein mL53RA [auth k]112Homo sapiensMutation(s): 1 
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GTEx:  ENSG00000204822 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L54, mitochondrialSA [auth l]138Homo sapiensMutation(s): 0 
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Find proteins for Q6P161 (Homo sapiens)
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GTEx:  ENSG00000183617 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein L55, mitochondrialTA [auth m]128Homo sapiensMutation(s): 0 
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Find proteins for Q7Z7F7 (Homo sapiens)
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GTEx:  ENSG00000162910 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein 63, mitochondrialUA [auth o]102Homo sapiensMutation(s): 0 
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Find proteins for Q9BQC6 (Homo sapiens)
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GTEx:  ENSG00000173141 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
Peptidyl-tRNA hydrolase ICT1, mitochondrialVA [auth p]206Homo sapiensMutation(s): 0 
EC: 3.1.1.29
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Find proteins for Q14197 (Homo sapiens)
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GTEx:  ENSG00000167862 
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
Growth arrest and DNA damage-inducible proteins-interacting protein 1WA [auth q]222Homo sapiensMutation(s): 0 
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Find proteins for Q8TAE8 (Homo sapiens)
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GTEx:  ENSG00000179271 
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein S18a, mitochondrialXA [auth r]196Homo sapiensMutation(s): 0 
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Find proteins for Q9NVS2 (Homo sapiens)
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GTEx:  ENSG00000096080 
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
39S ribosomal protein S30, mitochondrialYA [auth s]439Homo sapiensMutation(s): 0 
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Find proteins for Q9NP92 (Homo sapiens)
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GTEx:  ENSG00000112996 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S2, mitochondrialZA [auth AB]296Homo sapiensMutation(s): 0 
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Find proteins for Q9Y399 (Homo sapiens)
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GTEx:  ENSG00000122140 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S24, mitochondrialAB [auth AC]167Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000062582 
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S5, mitochondrialBB [auth AD]430Homo sapiensMutation(s): 0 
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Find proteins for P82675 (Homo sapiens)
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GTEx:  ENSG00000144029 
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S6, mitochondrialCB [auth AE]125Homo sapiensMutation(s): 0 
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Find proteins for P82932 (Homo sapiens)
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GTEx:  ENSG00000243927 
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S7, mitochondrialDB [auth AF]242Homo sapiensMutation(s): 0 
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Find proteins for Q9Y2R9 (Homo sapiens)
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GTEx:  ENSG00000125445 
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S9, mitochondrialEB [auth AG]396Homo sapiensMutation(s): 0 
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Find proteins for P82933 (Homo sapiens)
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GTEx:  ENSG00000135972 
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S10, mitochondrialFB [auth AH]201Homo sapiensMutation(s): 0 
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Find proteins for P82664 (Homo sapiens)
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GTEx:  ENSG00000048544 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S11, mitochondrialGB [auth AI]194Homo sapiensMutation(s): 1 
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Find proteins for P82912 (Homo sapiens)
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GTEx:  ENSG00000181991 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S12, mitochondrialHB [auth AJ]138Homo sapiensMutation(s): 0 
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Find proteins for O15235 (Homo sapiens)
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GTEx:  ENSG00000128626 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S14, mitochondrialIB [auth AK]128Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000120333 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S15, mitochondrialJB [auth AL]257Homo sapiensMutation(s): 0 
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Find proteins for P82914 (Homo sapiens)
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GTEx:  ENSG00000116898 
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S16, mitochondrialKB [auth AM]137Homo sapiensMutation(s): 0 
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Find proteins for Q9Y3D3 (Homo sapiens)
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GTEx:  ENSG00000182180 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S17, mitochondrialLB [auth AN]130Homo sapiensMutation(s): 0 
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Find proteins for Q9Y2R5 (Homo sapiens)
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GTEx:  ENSG00000239789 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S18b, mitochondrialMB [auth AO]258Homo sapiensMutation(s): 0 
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Find proteins for Q9Y676 (Homo sapiens)
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GTEx:  ENSG00000204568 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S18c, mitochondrialNB [auth AP]142Homo sapiensMutation(s): 0 
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Find proteins for Q9Y3D5 (Homo sapiens)
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GTEx:  ENSG00000163319 
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein bS21mOB [auth AQ]87Homo sapiensMutation(s): 2 
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Find proteins for P82921 (Homo sapiens)
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GTEx:  ENSG00000266472 
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S22, mitochondrialPB [auth AR]360Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000175110 
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S23, mitochondrialQB [auth AS]190Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000181610 
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein mS25RB [auth AT]169Homo sapiensMutation(s): 0 
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Find proteins for P82663 (Homo sapiens)
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GTEx:  ENSG00000131368 
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S26, mitochondrialSB [auth AU]205Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000125901 
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S27, mitochondrialTB [auth AV]414Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000113048 
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S28, mitochondrialUB [auth AW]187Homo sapiensMutation(s): 0 
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Find proteins for Q9Y2Q9 (Homo sapiens)
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GTEx:  ENSG00000147586 
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S29, mitochondrialVB [auth AX]398Homo sapiensMutation(s): 0 
EC: 3.6.5
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Find proteins for P51398 (Homo sapiens)
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GTEx:  ENSG00000132676 
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S31, mitochondrialWB [auth AY]395Homo sapiensMutation(s): 0 
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Find proteins for Q92665 (Homo sapiens)
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GTEx:  ENSG00000102738 
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S33, mitochondrialXB [auth AZ]106Homo sapiensMutation(s): 0 
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Find proteins for Q9Y291 (Homo sapiens)
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GTEx:  ENSG00000090263 
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S34, mitochondrialYB [auth A0]217Homo sapiensMutation(s): 0 
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Find proteins for P82930 (Homo sapiens)
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GTEx:  ENSG00000074071 
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
28S ribosomal protein S35, mitochondrialZB [auth A1]323Homo sapiensMutation(s): 0 
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Find proteins for P82673 (Homo sapiens)
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GTEx:  ENSG00000061794 
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein mS37AC [auth A2]118Homo sapiensMutation(s): 1 
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Find proteins for Q96BP2 (Homo sapiens)
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GTEx:  ENSG00000172586 
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
Aurora kinase A-interacting proteinBC [auth A3]199Homo sapiensMutation(s): 0 
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Find proteins for Q9NWT8 (Homo sapiens)
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GTEx:  ENSG00000175756 
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Entity ID: 81
MoleculeChains Sequence LengthOrganismDetailsImage
Pentatricopeptide repeat domain-containing protein 3, mitochondrialCC [auth A4]689Homo sapiensMutation(s): 0 
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Find proteins for Q96EY7 (Homo sapiens)
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GTEx:  ENSG00000132300 
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Entity ID: 1
MoleculeChains LengthOrganismImage
mitochondrial tRNAValA [auth B]72Homo sapiens
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Entity ID: 82
MoleculeChains LengthOrganismImage
E/E-tRNADC [auth Ay]52Homo sapiens
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Entity ID: 83
MoleculeChains LengthOrganismImage
12S mitochondrial rRNAEC [auth AA]954Homo sapiens
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Entity ID: 84
MoleculeChains LengthOrganismImage
16S mitochondrial rRNAFC [auth A]1,558Homo sapiens
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Entity ID: 85
MoleculeChains LengthOrganismImage
mRNAGC [auth Az]32Homo sapiens
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Entity ID: 86
MoleculeChains LengthOrganismImage
P/P-tRNAHC [auth Ax]70Homo sapiens
Sequence Annotations
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Small Molecules
Ligands 7 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
T1C
Query on T1C

Download Ideal Coordinates CCD File 
SC [auth AA],
SD [auth A],
TD [auth A]
TIGECYCLINE
C29 H41 N5 O8
FPZLLRFZJZRHSY-HJYUBDRYSA-P
ATP
Query on ATP

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PC [auth AX]ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
GDP
Query on GDP

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RC [auth AX]GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
FES
Query on FES

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MC [auth r],
NC [auth AP],
OC [auth AT]
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
VAL
Query on VAL

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IC [auth B]VALINE
C5 H11 N O2
KZSNJWFQEVHDMF-BYPYZUCNSA-N
K
Query on K

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JG [auth A]
KG [auth A]
LG [auth A]
MG [auth A]
NG [auth A]
JG [auth A],
KG [auth A],
LG [auth A],
MG [auth A],
NG [auth A],
OG [auth A],
PG [auth A],
QD [auth AA],
QG [auth A],
RD [auth AA],
RG [auth A],
SG [auth A],
TG [auth A],
UG [auth A],
VG [auth A],
WG [auth A]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG
Query on MG

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AD [auth AA]
AE [auth A]
AF [auth A]
AG [auth A]
BD [auth AA]
AD [auth AA],
AE [auth A],
AF [auth A],
AG [auth A],
BD [auth AA],
BE [auth A],
BF [auth A],
BG [auth A],
CD [auth AA],
CE [auth A],
CF [auth A],
CG [auth A],
DD [auth AA],
DE [auth A],
DF [auth A],
DG [auth A],
ED [auth AA],
EE [auth A],
EF [auth A],
EG [auth A],
FD [auth AA],
FE [auth A],
FF [auth A],
FG [auth A],
GD [auth AA],
GE [auth A],
GF [auth A],
GG [auth A],
HD [auth AA],
HE [auth A],
HF [auth A],
HG [auth A],
ID [auth AA],
IE [auth A],
IF [auth A],
IG [auth A],
JC [auth D],
JD [auth AA],
JE [auth A],
JF [auth A],
KC [auth E],
KD [auth AA],
KE [auth A],
KF [auth A],
LC [auth 2],
LD [auth AA],
LE [auth A],
LF [auth A],
MD [auth AA],
ME [auth A],
MF [auth A],
ND [auth AA],
NE [auth A],
NF [auth A],
OD [auth AA],
OE [auth A],
OF [auth A],
PD [auth AA],
PE [auth A],
PF [auth A],
QC [auth AX],
QE [auth A],
QF [auth A],
RE [auth A],
RF [auth A],
SE [auth A],
SF [auth A],
TC [auth AA],
TE [auth A],
TF [auth A],
UC [auth AA],
UD [auth A],
UE [auth A],
UF [auth A],
VC [auth AA],
VD [auth A],
VE [auth A],
VF [auth A],
WC [auth AA],
WD [auth A],
WE [auth A],
WF [auth A],
XC [auth AA],
XD [auth A],
XE [auth A],
XF [auth A],
YC [auth AA],
YD [auth A],
YE [auth A],
YF [auth A],
ZC [auth AA],
ZD [auth A],
ZE [auth A],
ZF [auth A]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
THC
Query on THC
IA [auth b]L-PEPTIDE LINKINGC6 H11 N O4THR
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Knut and Alice Wallenberg FoundationSweden023405053

Revision History  (Full details and data files)

  • Version 1.0: 2025-03-12
    Type: Initial release
  • Version 1.1: 2025-05-14
    Changes: Data collection, Database references