8ROQ | pdb_00008roq

FAdV-C4 Aviadenovirus structure, strain KR5


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Aviadenovirus structure: A highly thermostable capsid in the absence of stabilizing proteins.

Perez-Illana, M.Schachner, A.Hernando-Perez, M.Condezo, G.N.Paradela, A.Martinez, M.Marabini, R.Hess, M.San Martin, C.

(2025) PLoS Pathog 21: e1013553-e1013553

  • DOI: https://doi.org/10.1371/journal.ppat.1013553
  • Primary Citation of Related Structures:  
    8ROQ

  • PubMed Abstract: 

    High-resolution structural studies have mainly focused on two out of the six adenovirus genera: mastadenoviruses and atadenoviruses. Here we report the high-resolution structure of an aviadenovirus, the poultry pathogen fowl adenovirus serotype 4 (FAdV-C4). FAdV-C4 virions are highly thermostable, despite lacking minor coat and core proteins shown to stabilize the mast- and atadenovirus particles, having no genus-specific cementing proteins, and packaging a 25% longer genome. Unique structural features of the FAdV-C4 hexon include a large insertion at the trimer equatorial region, and a long N-terminal tail. Protein IIIa conformation is closer to atadenoviruses than to mastadenoviruses, while protein VIII diverges from all previously reported structures. We interpret these differences in light of adenovirus evolution. Finally, we discuss the possible role of core composition in determining capsid stability properties. These results enlarge our view on the structural diversity of adenoviruses, and provide useful information to counteract fowl pathogens or use non-human adenoviruses as vectors.


  • Organizational Affiliation
    • Department of Macromolecular Structures, Centro Nacional de Biotecnología (CNB-CSIC), Madrid, Spain.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Hexon protein
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
937Fowl aviadenovirus CMutation(s): 0 
UniProt
Find proteins for H8WQV9 (Fowl aviadenovirus C)
Explore H8WQV9 
Go to UniProtKB:  H8WQV9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupH8WQV9
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Penton protein525Fowl aviadenovirus CMutation(s): 0 
UniProt
Find proteins for P32538 (Fowl adenovirus C serotype 10 (strain SA2))
Explore P32538 
Go to UniProtKB:  P32538
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP32538
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
PIIIa590Fowl aviadenovirus CMutation(s): 0 
UniProt
Find proteins for F2VJG9 (Fowl aviadenovirus C)
Explore F2VJG9 
Go to UniProtKB:  F2VJG9
Entity Groups  
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UniProt GroupF2VJG9
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Pre-hexon-linking protein VIII
O, P
247Fowl aviadenovirus CMutation(s): 0 
UniProt
Find proteins for H8WQW6 (Fowl aviadenovirus C)
Explore H8WQW6 
Go to UniProtKB:  H8WQW6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupH8WQW6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other privateLa Caixa Foundation (ID 100010434),La Caixa Foundation (ID 100010434),LCF/BQ/SO16/52270032)
Other governmentco-funded by the Spanish State Research Agency and the European Regional Development Fund, PID2022-136456NB-I00/ AEI/10.13039/501100011033/FEDER,UE

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-29
    Type: Initial release
  • Version 1.1: 2025-10-15
    Changes: Data collection
  • Version 1.2: 2025-10-22
    Changes: Data collection, Database references