8RKZ | pdb_00008rkz

Crystal structure of a cysteine hydrolase from Phytophthora infestans

PDB DOI: https://doi.org/10.2210/pdb8RKZ/pdb

Classification: HYDROLASE
Organism(s): Phytophthora infestans
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-01-02 Released: 2025-01-15
Deposition Author(s): Altegoer, F., Weiland, P., Bange, G.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.235 (Depositor), 0.235 (DCC)
R-Value Work:
0.191 (Depositor), 0.190 (DCC)
R-Value Observed:
0.193 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural and functional characterization of an isochorismate (ISC)-like protein in a plant-pathogenic fungus

Rubio Elizalde, I., Christ, M., Weiland, P., Jalomo, E., Voll, L., Altegoer, F., Bange, G.

To be published.

Macromolecule Content

Total Structure Weight: 367.75 kDa
Atom Count: 25,784
Modeled Residue Count: 3,169
Deposited Residue Count: 3,344
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Isochorismatase family	A [auth G] B [auth H] C [auth L] D [auth M] E [auth D] A [auth G], B [auth H], C [auth L], D [auth M], E [auth D], F [auth J], G [auth I], H [auth K], I [auth A], J [auth P], K [auth O], L [auth N], M [auth B], N [auth C], O [auth F], P [auth E]	209	Phytophthora infestans	Mutation(s): 0 Gene Names: GN244_ATG15348, GN958_ATG18013
UniProt
Find proteins for D0P3W1 (Phytophthora infestans (strain T30-4)) Explore D0P3W1 Go to UniProtKB: D0P3W1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	D0P3W1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.235 (Depositor), 0.235 (DCC)
R-Value Work: 0.191 (Depositor), 0.190 (DCC)
R-Value Observed: 0.193 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.34	α = 90
b = 218.35	β = 102.41
c = 101.59	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-01-15

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded	Germany	--

Revision History (Full details and data files)

Version 1.0: 2025-01-15
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.