8RGX | pdb_00008rgx

Cryo-EM structure of the Bacterial Proteasome Activator Bpa of Mycobacterium tuberculosis


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Substrates bind to residues lining the ring of asymmetrically engaged bacterial proteasome activator Bpa.

von Rosen, T.Zdanowicz, R.El Hadeg, Y.Afanasyev, P.Boehringer, D.Leitner, A.Glockshuber, R.Weber-Ban, E.

(2025) Nat Commun 16: 3042-3042

  • DOI: https://doi.org/10.1038/s41467-025-58073-1
  • Primary Citation of Related Structures:  
    8RGX

  • PubMed Abstract: 

    Mycobacteria harbor a proteasome that was acquired by Actinobacteria through horizontal gene transfer and that supports the persistence of the human pathogen Mycobacterium tuberculosis within host macrophages. The core particle of the proteasome (20S CP) associates with ring-shaped activator complexes to degrade protein substrates. One of these is the bacterial proteasome activator Bpa that stimulates the ATP-independent proteasomal degradation of the heat shock repressor HspR. In this study, we determine the cryogenic electron microscopy 3D reconstruction of the complex between Bpa and its natural substrate HspR at 4.1 Å global resolution. The resulting maps allow us to identify regions of Bpa that interact with HspR. Using structure-guided site-directed mutagenesis and in vitro biochemical assays, we confirm the importance of the identified residues for Bpa-mediated substrate recruitment and subsequent proteasomal degradation. Additionally, we show that the dodecameric Bpa ring associates asymmetrically with the heptameric α-rings of the 20S CP, adopting a conformation resembling a hinged lid, while still engaging all seven docking sites on the proteasome.


  • Organizational Affiliation
    • Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Bacterial proteasome activator
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
181Mycobacterium tuberculosis H37RvMutation(s): 0 
Gene Names: bpa
UniProt
Find proteins for P9WKX3 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Explore P9WKX3 
Go to UniProtKB:  P9WKX3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP9WKX3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland--

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-02
    Type: Initial release
  • Version 1.1: 2025-04-09
    Changes: Data collection, Database references