8R2G | pdb_00008r2g

Crystal structure of a BRCA2-DMC1 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.45 Å
  • R-Value Free: 
    0.306 (Depositor), 0.310 (DCC) 
  • R-Value Work: 
    0.264 (Depositor), 0.270 (DCC) 
  • R-Value Observed: 
    0.266 (Depositor) 

Starting Model: experimental
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This is version 1.1 of the entry. See complete history


Literature

BRCA2 stabilises RAD51 and DMC1 nucleoprotein filaments through a conserved interaction mode.

Dunce, J.M.Davies, O.R.

(2024) Nat Commun 15: 8292-8292

  • DOI: https://doi.org/10.1038/s41467-024-52699-3
  • Primary Citation of Related Structures:  
    6R3P, 8R2G

  • PubMed Abstract: 

    BRCA2 is essential for DNA repair by homologous recombination in mitosis and meiosis. It interacts with recombinases RAD51 and DMC1 to facilitate the formation of nucleoprotein filaments on resected DNA ends that catalyse recombination-mediated repair. BRCA2's BRC repeats bind and disrupt RAD51 and DMC1 filaments, whereas its PhePP motifs bind recombinases and stabilise their nucleoprotein filaments. However, the mechanism of filament stabilisation has hitherto remained unknown. Here, we report the crystal structure of a BRCA2-DMC1 complex, revealing how core interaction sites of PhePP motifs bind to recombinases. The interaction mode is conserved for RAD51 and DMC1, which selectively bind to BRCA2's two distinct PhePP motifs via subtly divergent binding pockets. PhePP motif sequences surrounding their core interaction sites protect nucleoprotein filaments from BRC-mediated disruption. Hence, we report the structural basis of how BRCA2's PhePP motifs stabilise RAD51 and DMC1 nucleoprotein filaments for their essential roles in mitotic and meiotic recombination.


  • Organizational Affiliation
    • Department of Biochemistry, University of Cambridge, Cambridge, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Meiotic recombination protein DMC1/LIM15 homolog
A, B, C, D, E
A, B, C, D, E, F, G, H
261Homo sapiensMutation(s): 0 
Gene Names: DMC1
UniProt & NIH Common Fund Data Resources
Find proteins for Q14565 (Homo sapiens)
Explore Q14565 
Go to UniProtKB:  Q14565
PHAROS:  Q14565
GTEx:  ENSG00000100206 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ14565
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Breast cancer type 2 susceptibility protein
I, J, K, L, M
I, J, K, L, M, N, O
14Homo sapiensMutation(s): 0 
Gene Names: BRCA2FACDFANCD1
UniProt & NIH Common Fund Data Resources
Find proteins for P51587 (Homo sapiens)
Explore P51587 
Go to UniProtKB:  P51587
PHAROS:  P51587
GTEx:  ENSG00000139618 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP51587
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.45 Å
  • R-Value Free:  0.306 (Depositor), 0.310 (DCC) 
  • R-Value Work:  0.264 (Depositor), 0.270 (DCC) 
  • R-Value Observed: 0.266 (Depositor) 
Space Group: P 41 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 125.4α = 90
b = 125.4β = 90
c = 364.195γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXmodel building
XDSdata reduction
Aimlessdata scaling
autoPROCdata processing
PHASERphasing
STARANISOdata scaling

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom219413/Z/19/Z

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-22
    Type: Initial release
  • Version 1.1: 2024-12-04
    Changes: Database references, Structure summary