8Q5Z | pdb_00008q5z

Crystal structure of bovine Thiosulfate sulfurtransferase

• PDB DOI: https://doi.org/10.2210/pdb8Q5Z/pdb
• Entry: 8Q5Z supersedes: 8BGQ

• Classification: STRUCTURAL PROTEIN
• Organism(s): Bos taurus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-08-10 Released: 2023-09-20 
• Deposition Author(s): Goor, H.v., Groves, M.R., AL-Dahmani, Z.M., Wang, C.
• Funding Organization(s): Dutch Kidney Foundation

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 
  0.163 (Depositor), 0.170 (DCC) 
• R-Value Work: 
  0.146 (Depositor), 0.160 (DCC) 

Starting Model: experimental

Literature

Crystal structure of bovine Thiosulfate sulfurtransferase

AL-Dahmani, Z.M., Groves, M.R., Goo, H.v.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 33.36 kDa 
• Atom Count: 2,640 
• Modeled Residue Count: 291 
• Deposited Residue Count: 297 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thiosulfate sulfurtransferase	A	297	Bos taurus	Mutation(s): 0  Gene Names: TST EC: 2.8.1.1
UniProt
Find proteins for P00586 (Bos taurus) Explore P00586  Go to UniProtKB:  P00586

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NA	B [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free:  0.163 (Depositor), 0.170 (DCC) 
• R-Value Work:  0.146 (Depositor), 0.160 (DCC) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 153.857	α = 90
b = 49.506	β = 98.504
c = 41.863	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-09-20 
Deposition Author(s): Goor, H.v., Groves, M.R., AL-Dahmani, Z.M., Wang, C.
• This entry supersedes: 8BGQ

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Funding Organization	Location	Grant Number
Dutch Kidney Foundation	Netherlands	--

Revision History  

• Version 1.0: 2023-09-20
  Type: Initial release
  
• Version 1.1: 2024-02-14
  Changes: Advisory