8Q2C | pdb_00008q2c

Crystal structure of the E. coli PqiC Lipoprotein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.21 Å
  • R-Value Free: 
    0.306 (Depositor), 0.303 (DCC) 
  • R-Value Work: 
    0.251 (Depositor), 0.250 (DCC) 
  • R-Value Observed: 
    0.253 (Depositor) 

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

Validation slider image for 8Q2C

This is version 1.1 of the entry. See complete history

Literature

An octameric PqiC toroid stabilises the outer-membrane interaction of the PqiABC transport system.

Cooper, B.F.Ratkeviciute, G.Clifton, L.A.Johnston, H.Holyfield, R.Hardy, D.J.Caulton, S.G.Chatterton, W.Sridhar, P.Wotherspoon, P.Hughes, G.W.Hall, S.C.Lovering, A.L.Knowles, T.J.

(2024) EMBO Rep 25: 82-101

  • DOI: https://doi.org/10.1038/s44319-023-00014-4
  • Primary Citation Related Structures: 
    8Q2C, 8Q2D

  • PubMed Abstract: 

    The E. coli Paraquat Inducible (Pqi) Pathway is a putative Gram-negative phospholipid transport system. The pathway comprises three components: an integral inner membrane protein (PqiA), a periplasmic spanning MCE family protein (PqiB) and an outer membrane lipoprotein (PqiC). Interactions between all complex components, including stoichiometry, remain uncharacterised; nevertheless, once assembled into their quaternary complex, the trio of Pqi proteins are anticipated to provide a continuous channel between the inner and outer membranes of diderms. Here, we present X-ray structures of both the native and a truncated, soluble construct of the PqiC lipoprotein, providing insight into its biological assembly, and utilise neutron reflectometry to characterise the nature of the PqiB-PqiC-membrane interaction. Finally, we employ phenotypic complementation assays to probe specific PqiC residues, which imply the interaction between PqiB and PqiC is less intimate than previously anticipated.


  • Organizational Affiliation
    • Sir William Dunn School of Pathology, University of Oxford, OX1 3RE, Oxford, UK.

Macromolecule Content 

  • Total Structure Weight: 43.44 kDa 
  • Atom Count: 2,580 
  • Modeled Residue Count: 330 
  • Deposited Residue Count: 390 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Intermembrane transport lipoprotein PqiCA [auth B],
B [auth A]
195Escherichia coliMutation(s): 0 
Gene Names: pqiCymbAb0952JW5127
UniProt
Find proteins for P0AB10 (Escherichia coli (strain K12))
Explore P0AB10 
Go to UniProtKB:  P0AB10
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AB10
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.21 Å
  • R-Value Free:  0.306 (Depositor), 0.303 (DCC) 
  • R-Value Work:  0.251 (Depositor), 0.250 (DCC) 
  • R-Value Observed: 0.253 (Depositor) 
Space Group: I 4 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 132.148α = 90
b = 132.148β = 90
c = 185.043γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
autoPROCdata reduction
STARANISOdata scaling
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/M01116X/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/S017283/1

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-20
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Database references