8PRJ | pdb_00008prj

The structure of v31Bagel8

• PDB DOI: https://doi.org/10.2210/pdb8PRJ/pdb

• Classification: BIOSYNTHETIC PROTEIN
• Organism(s): synthetic construct
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): No 


• Deposited: 2023-07-12 Released: 2024-07-24 
• Deposition Author(s): Vandebroek, L., Voet, A.R.D., Lee, X.Y.
• Funding Organization(s): Research Foundation - Flanders (FWO)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Free: 
  0.167 (Depositor), 0.167 (DCC) 
• R-Value Work: 
  0.135 (Depositor), 0.135 (DCC) 
• R-Value Observed: 
  0.137 (Depositor) 

Literature

The structure of v13Bagel8

Vandebroek, L., Voet, A.R.D., Lee, X.Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 34.57 kDa 
• Atom Count: 3,282 
• Modeled Residue Count: 320 
• Deposited Residue Count: 320 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
v31Bagel8	A	320	synthetic construct	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CL	B [auth A], C [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Free:  0.167 (Depositor), 0.167 (DCC) 
• R-Value Work:  0.135 (Depositor), 0.135 (DCC) 
• R-Value Observed: 0.137 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 94.254	α = 90
b = 72.612	β = 114.12
c = 55.904	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
XDS	data reduction
MOLREP	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2024-07-24 
Deposition Author(s): Vandebroek, L., Voet, A.R.D., Lee, X.Y.

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Funding Organization	Location	Grant Number
Research Foundation - Flanders (FWO)	Belgium	1235722N

Revision History  

• Version 1.0: 2024-07-24
  Type: Initial release