8PR6

Crystal structure of Corynebacterium glutamicum mycoredoxin-3 at 1.7 A resolution.

PDB DOI: https://doi.org/10.2210/pdb8PR6/pdb

Classification: OXIDOREDUCTASE
Organism(s): Corynebacterium glutamicum
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-07-12 Released: 2023-10-25
Deposition Author(s): Baranova, E.V., Wahni, K., Ezerina, D., Messens, J.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.257
R-Value Work: 0.217
R-Value Observed: 0.219

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Unveiling the enigmatic traits of Corynebacterium glutamicum mycoredoxin-3: A tiny redox protein displaying swapped homodimer formation and DsbA-like oxidase activity

Wahni, K., Baranova, E., Ezerina, D., Van Molle, I., Van Laer, K., Messens, J.

(2023) Redox Biochem Chem 5-6: 100014

DOI: https://doi.org/10.1016/j.rbc.2023.100014

Macromolecule Content

Total Structure Weight: 19.12 kDa
Atom Count: 1,321
Modelled Residue Count: 157
Deposited Residue Count: 170
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thioredoxin family protein	A, B	85	Corynebacterium glutamicum	Mutation(s): 0 Gene Names: AUO95_11055
UniProt
Find proteins for A0A1Q6BKH4 (Corynebacterium glutamicum) Explore A0A1Q6BKH4 Go to UniProtKB: A0A1Q6BKH4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A1Q6BKH4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.257
R-Value Work: 0.217
R-Value Observed: 0.219
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.124	α = 90
b = 36.248	β = 99.01
c = 68.719	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SCALA	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-10-25

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	Belgium	VIB C0701JOME

Revision History (Full details and data files)

Version 1.0: 2023-10-25
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.