8PQ7

The Potato Late Blight pathogen (Phytophthora infestans) effector protein Pi04134 in complex with potato protein phosphatase type 1c (PP1c).


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.205 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

The WY Domain of an RxLr Effector Drives Interactions with a Host Target Phosphatase to Mimic Host Regulatory Proteins and Promote Phytophthora infestans Infection.

Bentham, A.R.Wang, W.Trusch, F.Varden, F.A.Birch, P.R.J.Banfield, M.J.

(2024) Mol Plant Microbe Interact 37: 239-249

  • DOI: https://doi.org/10.1094/MPMI-08-23-0118-FI
  • Primary Citation of Related Structures:  
    8PQ7

  • PubMed Abstract: 

    Plant pathogens manipulate the cellular environment of the host to facilitate infection and colonization, often leading to plant diseases. To accomplish this, many specialized pathogens secrete virulence proteins called effectors into the host cell, which subvert processes such as immune signalling, gene transcription, and host metabolism. Phytophthora infestans, the causative agent of potato late blight, employs an expanded repertoire of RxLR effectors with WY domains to manipulate the host through direct interaction with protein targets. However, our understanding of the molecular mechanisms underlying the interactions between WY effectors and their host targets remains limited. In this study, we performed a structural and biophysical characterization of the P. infestans WY effector, Pi04314, in complex with the potato Protein Phosphatase 1-c (PP1c). We elucidate how Pi04314 uses a WY domain and a specialised C-terminal loop carrying a KVxF motif that interact with conserved surfaces on PP1c, known to be used by host regulatory proteins for guiding function. Through biophysical and in planta analyses, we demonstrate that Pi04314 WY or KVxF mutants lose their ability to bind PP1c. The loss of PP1c binding correlates with changes in PP1c nucleolar localisation and a decrease in lesion size in plant infection assays. This study provides insights into the manipulation of plant hosts by pathogens, revealing how effectors exploit key regulatory interfaces in host proteins to modify their function and facilitate disease.


  • Organizational Affiliation

    John Innes Centre, Department of Biological Chemistry, Norwich, United Kingdom of Great Britain and Northern Ireland; adam.bentham@jic.ac.uk.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Serine/threonine-protein phosphatase
A, C
295Solanum tuberosumMutation(s): 0 
Gene Names: 102587690
UniProt
Find proteins for M1C5B8 (Solanum tuberosum)
Explore M1C5B8 
Go to UniProtKB:  M1C5B8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupM1C5B8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
RxLR effector protein PexRD24
B, D
89Phytophthora infestansMutation(s): 0 
Gene Names: PexRD24PITG_04314
UniProt
Find proteins for D0N0Z8 (Phytophthora infestans (strain T30-4))
Explore D0N0Z8 
Go to UniProtKB:  D0N0Z8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD0N0Z8
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.205 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 55.492α = 84.35
b = 57.036β = 86.49
c = 59.015γ = 89.85
Software Package:
Software NamePurpose
REFMACrefinement
xia2data reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
John Innes FoundationUnited Kingdom--
UK Research and Innovation (UKRI)United KingdomBB/M011216/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/P012574
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBBS/E/J/000PR9797

Revision History  (Full details and data files)

  • Version 1.0: 2023-07-19
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Data collection, Database references
  • Version 1.2: 2024-04-10
    Changes: Database references
  • Version 1.3: 2024-04-17
    Changes: Database references