8PAQ

Structure of the small subunit of the laccase-like Nlac protein from Pleurotus eryngii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.195 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Role and structure of the small subunit forming heterodimers with laccase-like enzymes.

Aza, P.Linde, D.Molpeceres, G.Vind, J.Medrano, F.J.Camarero, S.

(2023) Protein Sci 32: e4734-e4734

  • DOI: https://doi.org/10.1002/pro.4734
  • Primary Citation of Related Structures:  
    8PAQ

  • PubMed Abstract: 

    Unlike laccases sensu stricto, which are usually monomeric enzymes, laccase-like enzymes recently re-classified as Novel Laccases (NLACs) are characterized by the formation of heterodimers with small proteins (subunits) of unknown function. Here the NLAC from Pleurotus eryngii (PeNL) and a small protein selected from the fungal genome, that is homologous to reported POXA3 from Pleurotus ostreatus, were produced in Aspergillus oryzae separately or together. The two proteins interacted regardless of whether the small subunit was co-expressed or exogenously added to the enzyme. The stability and catalytic activity of PeNL was significantly enhanced in the presence of the small subunit. Size exclusion chromatography-multi angle light scattering (SEC-MALS) analysis confirmed that the complex PeNL-ss is a heterodimer of 77.4 kDa. The crystallographic structure of the small protein expressed in Escherichia coli was solved at 1.6 Å resolution. This is the first structure elucidated of a small subunit of a NLAC. The helix bundle structure of the small subunit accommodates well with the enzyme model structure, including interactions with specific regions of NLACs and some amino acid residues of the substrate-binding loops.


  • Organizational Affiliation

    Centro de Investigaciones Biológicas Margarita Salas, CSIC, Madrid, Spain.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
POXA3b laccase small subunit
A, B
166Pleurotus eryngiiMutation(s): 0 
EC: 1.10.3.2
UniProt
Find proteins for A0A6G7BM61 (Pleurotus eryngii var. ferulae)
Explore A0A6G7BM61 
Go to UniProtKB:  A0A6G7BM61
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A6G7BM61
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.195 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 124.72α = 90
b = 124.72β = 90
c = 55.812γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
autoPROCdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministerio de Ciencia e Innovacion (MCIN)SpainBIO2017-86559-R
Ministerio de Ciencia e Innovacion (MCIN)SpainPID2021-126384OB-I00

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-07
    Type: Initial release