8P2U | pdb_00008p2u

Crystal structure of S6BE with Silicotungstic Acid (STA) polyoxometalate

PDB DOI: https://doi.org/10.2210/pdb8P2U/pdb

Classification: UNKNOWN FUNCTION
Organism(s): synthetic construct
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-05-16 Released: 2024-06-12
Deposition Author(s): Wouters, S.M.L., Kamata, K., Vandebroek, L.
Funding Organization(s): Research Foundation - Flanders (FWO)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free:
0.212 (Depositor), 0.228 (DCC)
R-Value Work:
0.179 (Depositor), 0.192 (DCC)
R-Value Observed:
0.181 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 8P2U

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of S6BE with Silicotungstic Acid (STA) polyoxometalate

Wouters, S.M.L., Kamata, K., Takahashi, K., Vandebroek, L., Parac-Vogt, T.N., Tame, J.R.H., Voet, A.R.D.

To be published.

Macromolecule Content

Total Structure Weight: 33.33 kDa
Atom Count: 2,416
Modeled Residue Count: 281
Deposited Residue Count: 286
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
S6BE	A	286	synthetic construct	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SIW (Subject of Investigation/LOI) Query on SIW Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	Keggin (STA) O₄₀ Si W₁₂ LFGROBKNYNLKMF-UHFFFAOYSA-B		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free: 0.212 (Depositor), 0.228 (DCC)
R-Value Work: 0.179 (Depositor), 0.192 (DCC)
R-Value Observed: 0.181 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.976	α = 63.28
b = 43.244	β = 90
c = 44.069	γ = 66.15

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-06-12

Deposition Author(s):

Wouters, S.M.L.

Funding Organization	Location	Grant Number
Research Foundation - Flanders (FWO)	Belgium	1S89918N
Research Foundation - Flanders (FWO)	Belgium	G0F9316N
Research Foundation - Flanders (FWO)	Belgium	G051917N

Revision History (Full details and data files)

Version 1.0: 2024-06-12
Type: Initial release

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.