Download MendeleyThogoto virus polymerase
Kouba, T., Cusack, S.To be published.
8P0U
Thogoto virus polymerase in Mode B conformation with defined endonuclease domain and bound to 32-mer loop promoter RNA
- PDB DOI: https://doi.org/10.2210/pdb8P0U/pdb
- EM Map EMD-17338: EMDB EMDataResource
- NAKB: 8P0U
- Classification: VIRAL PROTEIN
- Organism(s): Thogotovirus thogotoense
- Expression System: Trichoplusia ni
- Mutation(s): No
- Deposited: 2023-05-10 Released: 2024-05-22
- Funding Organization(s): French National Research Agency
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.92 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Polymerase acidic protein | 622 | Thogotovirus thogotoense | Mutation(s): 0 Gene Names: Segment 3 |  | |
UniProt | |||||
Find proteins for P27194 (Thogoto virus (isolate SiAr 126)) Explore P27194 Go to UniProtKB: P27194 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P27194 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| RNA-directed RNA polymerase catalytic subunit | 710 | Thogotovirus thogotoense | Mutation(s): 0 Gene Names: Segment 2 EC: 2.7.7.48 |  | |
UniProt | |||||
Find proteins for O41353 (Thogoto virus (isolate SiAr 126)) Explore O41353 Go to UniProtKB: O41353 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O41353 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Polymerase basic protein 2 | 769 | Thogotovirus thogotoense | Mutation(s): 0 Gene Names: Segment 1 |  | |
UniProt | |||||
Find proteins for Q9YNA4 (Thogoto virus (isolate SiAr 126)) Explore Q9YNA4 Go to UniProtKB: Q9YNA4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9YNA4 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| 3'RNA | D [auth R], E [auth V] | 32 | Thogotovirus thogotoense |  | |
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | F [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.92 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Entry History & Funding Information
Deposition Data
- Released Date: 2024-05-22 Deposition Author(s): Cusack, S., Kouba, T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| French National Research Agency | France | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-05-22
Type: Initial release
