8OXR | pdb_00008oxr

Structure of the N-terminal didomain d1_d2 of the Thrombospondin type-1 domain-containing 7A

PDB DOI: https://doi.org/10.2210/pdb8OXR/pdb

Classification: CELL ADHESION
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2023-05-02 Released: 2024-05-15
Deposition Author(s): Bochel, A., Mortensen, S.A., Chojnowski, G., Wilmanns, M.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.292 (Depositor), 0.292 (DCC)
R-Value Work:
0.227 (Depositor), 0.227 (DCC)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Structure of the N-terminal didomain d1_d2 of the Thrombospondin type-1 domain-containing 7A

Bochel, A., Mortensen, S.A., Seifert, L., Hengel, F.E., Jeffries, C.M., Chojnowski, G., Kretz, O., Huber, T.B., Tomas, N.M., Wilmanns, M.

To be published.

Macromolecule Content

Total Structure Weight: 16.52 kDa
Atom Count: 1,069
Modeled Residue Count: 127
Deposited Residue Count: 145
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thrombospondin type-1 domain-containing protein 7A	A	145	Homo sapiens	Mutation(s): 0 Gene Names: THSD7A, KIAA0960
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UPZ6 (Homo sapiens) Explore Q9UPZ6 Go to UniProtKB: Q9UPZ6
PHAROS: Q9UPZ6 GTEx: ENSG00000005108
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9UPZ6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.292 (Depositor), 0.292 (DCC)
R-Value Work: 0.227 (Depositor), 0.227 (DCC)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.843	α = 90
b = 108.714	β = 90
c = 53.536	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-05-15

Deposition Author(s):

Mortensen, S.A.

Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	264599542

Revision History (Full details and data files)

Version 1.0: 2024-05-15
Type: Initial release
Version 1.1: 2024-11-06
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.