8OSQ | pdb_00008osq

Why does the herpes simplex 1 virus-encoded UL49.5 protein fail to inhibit the TAP-dependent antigen presentation?

PDB DOI: https://doi.org/10.2210/pdb8OSQ/pdb
BMRB: 34809

Classification: VIRAL PROTEIN
Organism(s): Human alphaherpesvirus 1
Mutation(s): Yes

Deposited: 2023-04-19 Released: 2024-05-01
Deposition Author(s): Zhukov, I., Krupa, P., Karska, N., Rodziewicz-Motowidlo, S., Lipinska, A.D.
Funding Organization(s): Polish National Science Centre

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 10
Conformers Submitted: 20
Selection Criteria: all calculated structures submitted

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Why doesn't the UL49.5 protein from HSV-1 virus inhibit the TAP antigen presentation pathway?

Karska, N., Zhukov, I., Lipinska, A.D., Rodziewicz-Motowidlo, S., Krupa, P.

To be published.

Macromolecule Content

Total Structure Weight: 3.38 kDa
Atom Count: 237
Modeled Residue Count: 35
Deposited Residue Count: 35
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Envelope glycoprotein N	A	35	Human alphaherpesvirus 1	Mutation(s): 2
UniProt
Find proteins for O09800 (Human herpesvirus 1 (strain 17)) Explore O09800 Go to UniProtKB: O09800
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O09800
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
ABA Query on ABA	A	L-PEPTIDE LINKING	C₄ H₉ N O₂		ALA
NLE Query on NLE	A	L-PEPTIDE LINKING	C₆ H₁₃ N O₂		LEU

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 10
Conformers Submitted: 20
Selection Criteria: all calculated structures submitted

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-05-01

Deposition Author(s):

Rodziewicz-Motowidlo, S.

Funding Organization	Location	Grant Number
Polish National Science Centre	Poland	2020/04/X/ST4/01491

Revision History (Full details and data files)

Version 1.0: 2024-05-01
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.