8OSL

CLOCK-BMAL1 bound to the native Por nucleosome

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

CLOCK-BMAL1 bound to the native Por nucleosome

Xyz, X.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H3.1A, E139Homo sapiensMutation(s): 0 
Gene Names: 
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Find proteins for P68431 (Homo sapiens)
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PHAROS:  P68431
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UniProt GroupP68431
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H4B, F106Homo sapiensMutation(s): 0 
Gene Names: 
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Find proteins for P62805 (Homo sapiens)
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UniProt GroupP62805
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H2A type 1-B/EC, G133Homo sapiensMutation(s): 0 
Gene Names: HIST1H2AB, H2AFM, HIST1H2AE, H2AFA, H2AC4, H2AC8
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Find proteins for P04908 (Homo sapiens)
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PHAROS:  P04908
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UniProt GroupP04908
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H2B type 1-JD, H128Homo sapiensMutation(s): 0 
Gene Names: HIST1H2BJ, H2BFR, H2BC11
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Find proteins for P06899 (Homo sapiens)
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UniProt GroupP06899
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Circadian locomoter output cycles protein kaputK [auth M],
M [auth O]		375Mus musculusMutation(s): 0 
Gene Names: Clock
EC: 2.3.1.48
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IMPC:  MGI:99698
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UniProt GroupO08785
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
Basic helix-loop-helix ARNT-like protein 1L [auth N],
N [auth P]		384Mus musculusMutation(s): 0 
Gene Names: Bmal1, Arntl
UniProt
Find proteins for Q9WTL8 (Mus musculus)
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Entity ID: 5
MoleculeChainsLengthOrganismImage
DNA (147-MER)I147Homo sapiens
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Entity ID: 6
MoleculeChainsLengthOrganismImage
DNA (147-MER)J147Homo sapiens
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTRosettaEM
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union884331
Human Frontier Science Program (HFSP)FranceLT000646/2018-L5

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-24
    Type: Initial release