8OPQ | pdb_00008opq

Structure of Human Solute Carrier 26 family member A6 (SLC26A6) anion transporter in an inward-facing state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.28 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8OPQ

This is version 1.2 of the entry. See complete history

Literature

Structural and functional properties of the transporter SLC26A6 reveal mechanism of coupled anion exchange.

Tippett, D.N.Breen, C.Butler, S.J.Sawicka, M.Dutzler, R.

(2023) Elife 12

  • DOI: https://doi.org/10.7554/eLife.87178
  • Primary Citation Related Structures: 
    8OPQ

  • PubMed Abstract: 

    Members of the SLC26 family constitute a conserved class of anion transport proteins, which encompasses uncoupled transporters with channel-like properties, coupled exchangers and motor proteins. Among the 10 functional paralogs in humans, several participate in the secretion of bicarbonate in exchange with chloride and thus play an important role in maintaining pH homeostasis. Previously, we have elucidated the structure of murine SLC26A9 and defined its function as an uncoupled chloride transporter (Walter et al., 2019). Here we have determined the structure of the closely related human transporter SLC26A6 and characterized it as a coupled exchanger of chloride with bicarbonate and presumably also oxalate. The structure defines an inward-facing conformation of the protein that generally resembles known structures of SLC26A9. The altered anion selectivity between both paralogs is a consequence of a remodeled ion binding site located in the center of a mobile unit of the membrane-inserted domain, which also accounts for differences in the coupling mechanism.


  • Organizational Affiliation
    • Department of Biochemistry, University of Zurich, Zurich, Switzerland.

Macromolecule Content 

  • Total Structure Weight: 167.7 kDa 
  • Atom Count: 10,006 
  • Modeled Residue Count: 1,296 
  • Deposited Residue Count: 1,532 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Solute carrier family 26 member 6
A, B
766Homo sapiensMutation(s): 0 
Gene Names: SLC26A6
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BXS9 (Homo sapiens)
Explore Q9BXS9 
Go to UniProtKB:  Q9BXS9
PHAROS:  Q9BXS9
GTEx:  ENSG00000225697 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BXS9
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.28 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland--

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-17
    Type: Initial release
  • Version 1.1: 2023-07-05
    Changes: Database references
  • Version 1.2: 2024-07-24
    Changes: Data collection