8OMR

Human tRNA guanine transglycosylase (TGT) bound to tRNAAsp


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural and functional insights into tRNA recognition by human tRNA guanine transglycosylase.

Sievers, K.Neumann, P.Susac, L.Da Vela, S.Graewert, M.Trowitzsch, S.Svergun, D.Tampe, R.Ficner, R.

(2024) Structure 32: 316

  • DOI: https://doi.org/10.1016/j.str.2023.12.006
  • Primary Citation of Related Structures:  
    8OMR

  • PubMed Abstract: 

    Eukaryotic tRNA guanine transglycosylase (TGT) is an RNA-modifying enzyme which catalyzes the base exchange of the genetically encoded guanine 34 of tRNAs Asp,Asn,His,Tyr for queuine, a hypermodified 7-deazaguanine derivative. Eukaryotic TGT is a heterodimer comprised of a catalytic and a non-catalytic subunit. While binding of the tRNA anticodon loop to the active site is structurally well understood, the contribution of the non-catalytic subunit to tRNA binding remained enigmatic, as no complex structure with a complete tRNA was available. Here, we report a cryo-EM structure of eukaryotic TGT in complex with a complete tRNA, revealing the crucial role of the non-catalytic subunit in tRNA binding. We decipher the functional significance of these additional tRNA-binding sites, analyze solution state conformation, flexibility, and disorder of apo TGT, and examine conformational transitions upon tRNA binding.


  • Organizational Affiliation

    Department of Molecular Structural Biology, GZMB, University of Göttingen, 37077 Göttingen, Germany.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Queuine tRNA-ribosyltransferase catalytic subunit 1405Homo sapiensMutation(s): 0 
Gene Names: QTRT1TGTTGUT
EC: 2.4.2.29
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BXR0 (Homo sapiens)
Explore Q9BXR0 
Go to UniProtKB:  Q9BXR0
PHAROS:  Q9BXR0
GTEx:  ENSG00000213339 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BXR0
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Queuine tRNA-ribosyltransferase accessory subunit 2415Homo sapiensMutation(s): 0 
Gene Names: QTRT2QTRTD1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H974 (Homo sapiens)
Explore Q9H974 
Go to UniProtKB:  Q9H974
PHAROS:  Q9H974
GTEx:  ENSG00000151576 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H974
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains LengthOrganismImage
tRNAAsp75Homo sapiens
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany--

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-20
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Database references
  • Version 1.2: 2024-03-20
    Changes: Database references