8OL8 | pdb_00008ol8

Solution NMR Structure of Lactamised Alpha-Synuclein 2-12 Peptide in 50% TFE.


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Stabilizing a Native Fold of Alpha-Synuclein with Short Helix-Constrained Peptides.

Meade, R.M.Allen, S.G.Lopez, A.J.Williams, C.Thomas-Wright, I.Heon-Roberts, R.Carey-Wood, M.Tang, T.M.S.Sero, J.E.Hunt, V.L.Wade-Martins, R.Crump, M.P.Mason, J.M.

(2025) JACS Au 5: 4321-4336

  • DOI: https://doi.org/10.1021/jacsau.5c00694
  • Primary Citation of Related Structures:  
    8OL8

  • PubMed Abstract: 

    Preventing the aggregation of α-synuclein (αS) into toxic oligomers and conformers is a major therapeutic goal in conditions such as Parkinson's disease and Lewy body dementia. However, the large intracellular protein-protein interfaces within such aggregates make this a challenging target for small molecule approaches or biologics, which often lack cell permeability. Peptides occupy a suitable middle ground and are increasingly being explored as preventative treatments. We previously showed that the N-terminal lipid binding region (αS 1-25 ) inhibits αS aggregation. Building on this, we designed a series of N- and C-terminal truncations to systematically reduce the peptide length, enabling a 56% downsizing (i.e., truncating 92% of the full-length αS protein), to identify the smallest functional unit capable of binding αS and potently blocking its aggregation and toxicity. We next introduced seven systematic i → i + 4 helix constraints to assess impact on (i) α-helicity, (ii) aggregation inhibition, (iii) serum stability, (iv) neuronal uptake, and (v) phenotypic rescue. This work maps key amphipathic features and identifies residues that are critical for αS engagement and inhibitory activity. The most effective helix-constrained peptide, αS 2-12 (L6), showed marked improvements across all metrics and represents a strong candidate for further therapeutic development.


  • Organizational Affiliation
    • Department of Life Sciences, University of Bath, Claverton Down, Bath BA2 7AY, United Kingdom.

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ACE-ASP-VAL-PHE-MET-LYS-LYS-LEU-SER-LYS-ASP-LYS-NH213Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P37840 (Homo sapiens)
Explore P37840 
Go to UniProtKB:  P37840
PHAROS:  P37840
GTEx:  ENSG00000145335 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP37840
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/T008741/1
Alzheimers Research UK (ARUK)United KingdomARUK-PG2018-003
Engineering and Physical Sciences Research CouncilUnited KingdomEP/L016354/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/L01386X/1

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-10
    Type: Initial release
  • Version 1.1: 2024-11-20
    Changes: Structure summary
  • Version 1.2: 2026-01-21
    Changes: Database references