8KF1 | pdb_00008kf1

The cryo-EM structure of AV-45 bound type1 amyloid beta 42 fibril.

• PDB DOI: https://doi.org/10.2210/pdb8KF1/pdb
• EM Map EMD-37195: EMDB EMDataResource

• Classification: PROTEIN FIBRIL
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2023-08-15 Released: 2024-08-21 
• Deposition Author(s): Zhao, Q.Y., Tao, Y.Q., Liu, C., Li, D.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.30 Å
• Aggregation State: FILAMENT 
• Reconstruction Method: HELICAL 

Literature

The cryo-EM structure of AV-45 bound type1 amyloid beta 42 fibril.

Zhao, Q.Y., Tao, Y.Q., Liu, C., Li, D.

To be published.

Biological Assembly 1  

Global Symmetry: Helical - H  (Explore in 3D)
Global Stoichiometry: Homo 12-mer - A12 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 1,045.28 kDa 
• Atom Count: 3,052 
• Modeled Residue Count: 408 
• Deposited Residue Count: 9,240 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
P3(40)	A [auth G], B [auth F], C [auth H], D [auth A], E [auth I], F [auth B], G [auth J], H [auth C], I [auth K], J [auth D], K [auth L], L [auth E]	770	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P05067 (Homo sapiens) Explore P05067  Go to UniProtKB:  P05067
PHAROS:  P05067 GTEx:  ENSG00000142192

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
VW6 (Subject of Investigation/LOI)	M [auth F], N [auth J]	4-[2-[6-[2-[2-(2-fluoranylethoxy)ethoxy]ethoxy]pyridin-3-yl]ethyl]-~{N}-methyl-aniline C20 H27 F N2 O3 MEMFJEKYDDUGHS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.30 Å
• Aggregation State: FILAMENT 
• Reconstruction Method: HELICAL 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-08-21 
Deposition Author(s): Zhao, Q.Y., Tao, Y.Q., Liu, C., Li, D.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-08-21
  Type: Initial release