8JZX

SLC15A4 inhibitor complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

A conformation-locking inhibitor of SLC15A4 with TASL proteostatic anti-inflammatory activity.

Boeszoermenyi, A.Bernaleau, L.Chen, X.Kartnig, F.Xie, M.Zhang, H.Zhang, S.Delacretaz, M.Koren, A.Hopp, A.K.Dvorak, V.Kubicek, S.Aletaha, D.Yang, M.Rebsamen, M.Heinz, L.X.Superti-Furga, G.

(2023) Nat Commun 14: 6626-6626

  • DOI: https://doi.org/10.1038/s41467-023-42070-3
  • Primary Citation of Related Structures:  
    8JZX

  • PubMed Abstract: 

    Dysregulation of pathogen-recognition pathways of the innate immune system is associated with multiple autoimmune disorders. Due to the intricacies of the molecular network involved, the identification of pathway- and disease-specific therapeutics has been challenging. Using a phenotypic assay monitoring the degradation of the immune adapter TASL, we identify feeblin, a chemical entity which inhibits the nucleic acid-sensing TLR7/8 pathway activating IRF5 by disrupting the SLC15A4-TASL adapter module. A high-resolution cryo-EM structure of feeblin with SLC15A4 reveals that the inhibitor binds a lysosomal outward-open conformation incompatible with TASL binding on the cytoplasmic side, leading to degradation of TASL. This mechanism of action exploits a conformational switch and converts a target-binding event into proteostatic regulation of the effector protein TASL, interrupting the TLR7/8-IRF5 signaling pathway and preventing downstream proinflammatory responses. Considering that all components involved have been genetically associated with systemic lupus erythematosus and that feeblin blocks responses in disease-relevant human immune cells from patients, the study represents a proof-of-concept for the development of therapeutics against this disease.


  • Organizational Affiliation

    CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
lysosomal transporter,ALFA tag,lysosomal transporter
A, B
581Homo sapienssynthetic constructMutation(s): 0 
Gene Names: SLC15A4
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N697 (Homo sapiens)
Explore Q8N697 
Go to UniProtKB:  Q8N697
PHAROS:  Q8N697
GTEx:  ENSG00000139370 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8N697
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
Q09 (Subject of Investigation/LOI)
Query on Q09

Download Ideal Coordinates CCD File 
E [auth A],
J [auth B]
2-(4-ethoxyphenyl)-N-[3-[(2R)-2-methylpiperidin-1-yl]propyl]quinoline-4-carboxamide
C27 H33 N3 O2
CJAGKBRBMHETMY-HXUWFJFHSA-N
CLR
Query on CLR

Download Ideal Coordinates CCD File 
D [auth A],
F [auth A],
H [auth B],
I [auth B]
CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N
NAG
Query on NAG

Download Ideal Coordinates CCD File 
C [auth A],
G [auth B]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China21532004, 31570733

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-27
    Type: Initial release
  • Version 1.1: 2023-11-15
    Changes: Database references
  • Version 2.0: 2023-12-13
    Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Polymer sequence, Source and taxonomy, Structure summary