8JZL | pdb_00008jzl

CryoEM structure of the Salmonella effector inositol phosphate phosphatase SopB

PDB DOI: https://doi.org/10.2210/pdb8JZL/pdb
EM Map EMD-36746: EMDB EMDataResource

Classification: LIPID BINDING PROTEIN
Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-07-05 Released: 2024-07-10
Deposition Author(s): Jiang, W.X., Cheng, X.Q., Wu, M., Ma, L.X.
Funding Organization(s): National Basic Research Program of China (973 Program)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8JZL

This is version 1.0 of the entry. See complete history.

Literature

CryoEM structure of the Salmonella effector inositol phosphate phosphatase SopB

Jiang, W.X., Cheng, X.Q., Wu, M., Ma, L.X., Xing, Q.

To be published.

Macromolecule Content

Total Structure Weight: 330.32 kDa
Atom Count: 23,184
Modeled Residue Count: 2,988
Deposited Residue Count: 2,988
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Inositol phosphate phosphatase SopB	A, B, C, D, E A, B, C, D, E, F	498	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	Mutation(s): 0 Gene Names: sopB, sigD, STM1091 EC: 3.1.3
UniProt
Find proteins for O30916 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore O30916 Go to UniProtKB: O30916
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O30916
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.62 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-07-10

Deposition Author(s):

Funding Organization	Location	Grant Number
National Basic Research Program of China (973 Program)	China	2021YFC2100100

Revision History (Full details and data files)

Version 1.0: 2024-07-10
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.