8JYZ | pdb_00008jyz

Cryo-EM structure of RCD-1 pore from Neurospora crassa


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.63 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Cleavage-independent activation of ancient eukaryotic gasdermins and structural mechanisms.

Li, Y.Hou, Y.Sun, Q.Zeng, H.Meng, F.Tian, X.He, Q.Shao, F.Ding, J.

(2024) Science 384: adm9190-adm9190

  • DOI: https://doi.org/10.1126/science.adm9190
  • Primary Citation of Related Structures:  
    8JYV, 8JYW, 8JYX, 8JYY, 8JYZ

  • PubMed Abstract: 

    Gasdermins (GSDMs) are pore-forming proteins that execute pyroptosis for immune defense. GSDMs are two-domain proteins, activated by proteolytic removal of the inhibitory domain. Here we report two types of cleavage-independent GSDM activation. First, Tricho GSDM, a pore-forming-domain-only protein from the basal metazoan Trichoplax adhaerens , is a disulfides-linked autoinhibited dimer, activated by reduction of the disulfides. Cryo-electron microscopy (cryo-EM) structure illustrates assembly mechanism for the 44-mer Tricho GSDM pore. Second, RCD-1-1/RCD-1-2, encoded by polymorphic rcd-1 in filamentous fungus Neurospora crassa , are also pore-forming-domain-only GSDMs. RCD-1-1 and RCD-1-2, when encountering each other, form pores and cause pyroptosis, underlying allorecognition in Neurospora . Cryo-EM structure reveals a pore of 11 RCD-1-1/RCD-1-2 heterodimers and heterodimerization-triggered pore assembly mechanism. This study shows mechanistic diversities in GSDM activation and indicates versatile functions of GSDMs.


  • Organizational Affiliation
    • Key Laboratory of Biomacromolecules (CAS), National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gasdermin-like protein rcd-1-1
A,
C,
E,
G,
I,
K,
M,
O,
Q,
S,
U [auth V]
261Neurospora crassaMutation(s): 0 
Gene Names: rcd-1-1NCU05712
UniProt
Find proteins for Q7SBA0 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
Explore Q7SBA0 
Go to UniProtKB:  Q7SBA0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7SBA0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Gasdermin-like protein rcd-1-2
B,
D,
F,
H,
J,
L,
N,
P,
R,
T,
V [auth W]
248Neurospora crassaMutation(s): 0 
Gene Names: rcd-1-2
UniProt
Find proteins for P0DW10 (Neurospora crassa)
Explore P0DW10 
Go to UniProtKB:  P0DW10
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0DW10
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.63 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChina--

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-01
    Type: Initial release
  • Version 1.1: 2024-05-08
    Changes: Database references
  • Version 1.2: 2024-05-15
    Changes: Database references
  • Version 1.3: 2024-05-29
    Changes: Database references