8JXK | pdb_00008jxk

Crystal Structure of Rv0047c from Mycobacterium tuberculosis

PDB DOI: https://doi.org/10.2210/pdb8JXK/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Mycobacterium tuberculosis H37Rv
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-06-30 Released: 2024-07-03
Deposition Author(s): Ansari, M.S., Yadav, V., Zohib, M., Pal, R.K., Biswal, B.K., Arora, A.
Funding Organization(s): Science and Engineering Research Board (SERB)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.15 Å
R-Value Free:
0.253 (Depositor), 0.250 (DCC)
R-Value Work:
0.204 (Depositor), 0.210 (DCC)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal Structure of Rv0047c from Mycobacterium tuberculosis

Ansari, M.S., Yadav, V., Zohib, M., Pal, R.K., Biswal, B.K., Arora, A.

To be published.

Macromolecule Content

Total Structure Weight: 124.31 kDa
Atom Count: 6,561
Modeled Residue Count: 935
Deposited Residue Count: 1,092
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Conserved protein	A, B, C, D, E A, B, C, D, E, F	182	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: Rv0047c
UniProt
Find proteins for P71704 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P71704 Go to UniProtKB: P71704
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P71704
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.15 Å
R-Value Free: 0.253 (Depositor), 0.250 (DCC)
R-Value Work: 0.204 (Depositor), 0.210 (DCC)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 102.17	α = 90
b = 102.17	β = 90
c = 191.88	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
iMOSFLM	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-07-03

Deposition Author(s):

Funding Organization	Location	Grant Number
Science and Engineering Research Board (SERB)	India	--

Revision History (Full details and data files)

Version 1.0: 2024-07-03
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.