8JTL

Structure of OY phytoplasma SAP05 binding with AtRpn10


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.186 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of OY phytoplasma SAP05 binding with AtRpn10

Zhang, L.Y.Du, Y.X.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome non-ATPase regulatory subunit 4 homolog
A, B
194Arabidopsis thalianaMutation(s): 0 
Gene Names: RPN10MBP1MCB1At4g38630F20M13.190T9A14.7
UniProt
Find proteins for P55034 (Arabidopsis thaliana)
Explore P55034 
Go to UniProtKB:  P55034
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP55034
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Sequence-variable mosaic (SVM) signal sequence domain-containing proteinC [auth D],
D [auth C]
105Onion yellows phytoplasma OY-MMutation(s): 0 
Gene Names: PAM_518
UniProt
Find proteins for Q6YQ57 (Onion yellows phytoplasma (strain OY-M))
Explore Q6YQ57 
Go to UniProtKB:  Q6YQ57
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6YQ57
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.186 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.41α = 90
b = 39.37β = 93.79
c = 121.94γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
Aimlessdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentYFC3401501

Revision History  (Full details and data files)

  • Version 1.0: 2023-07-12
    Type: Initial release
  • Version 1.1: 2023-07-19
    Changes: Database references, Structure summary