Download MendeleyCrystal structure of the bat MHC II molecule at 2.8 A resolution
Wang, S.To be published.
8JRJ
Crystal structure of the bat MHC II molecule at 2.8 A resolution
- PDB DOI: https://doi.org/10.2210/pdb8JRJ/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Eptesicus fuscus, Gallus gallus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-06-17 Released: 2024-06-05
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.291
- R-Value Work: 0.246
- R-Value Observed: 0.248
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HLA class II histocompatibility antigen, DR alpha chain | 182 | Eptesicus fuscus | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| MHC class II histocompatibility antigen, DR-1 beta chain | 190 | Eptesicus fuscus | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ALA-SER-PHE-ILE-ILE-ARG-SER-MET-PRO-GLN-GLU-THR | C [auth E] | 12 | Gallus gallus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.291
- R-Value Work: 0.246
- R-Value Observed: 0.248
- Space Group: P 42 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 92.56 | α = 90 |
| b = 92.56 | β = 90 |
| c = 108.78 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-06-05 Deposition Author(s): Wang, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-06-05
Type: Initial release
