8JNT | pdb_00008jnt

RxLR effector RxLR19 from Phytophthora capsici

• PDB DOI: https://doi.org/10.2210/pdb8JNT/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Phytophthora capsici
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-06-06 Released: 2024-06-12 
• Deposition Author(s): Sheng, H., Zhang, X.G.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.203 (Depositor), 0.200 (DCC) 
• R-Value Work: 
  0.174 (Depositor), 0.180 (DCC) 
• R-Value Observed: 
  0.175 (Depositor) 

Literature

Phytophthora capsici effector RxLR19 manipulates AsA biosynthesis pathway to promote infection by binding host GME protein

Sheng, H., Zhang, X.G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 8.93 kDa 
• Atom Count: 661 
• Modeled Residue Count: 77 
• Deposited Residue Count: 77 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RxLR19781	A	77	Phytophthora capsici	Mutation(s): 0  Gene Names: RxLR19781
UniProt
Find proteins for A0A6M3YRV4 (Phytophthora capsici) Explore A0A6M3YRV4  Go to UniProtKB:  A0A6M3YRV4

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.203 (Depositor), 0.200 (DCC) 
• R-Value Work:  0.174 (Depositor), 0.180 (DCC) 
• R-Value Observed: 0.175 (Depositor) 

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.741	α = 90
b = 49.741	β = 90
c = 61.17	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
SOLVE	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-06-12 
Deposition Author(s): Sheng, H., Zhang, X.G.

---

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	CARS-25-03B

Revision History  

• Version 1.0: 2024-06-12
  Type: Initial release