8J8Y | pdb_00008j8y

Phytoplasma immunodominant membrane protein

• PDB DOI: https://doi.org/10.2210/pdb8J8Y/pdb

• Classification: PROTEIN BINDING
• Organism(s): Peanut witches'-broom phytoplasma
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-05-02 Released: 2024-05-08 
• Deposition Author(s): Wang, H.C., Ko, T.P.
• Funding Organization(s): Ministry of Science and Technology (MoST, Taiwan)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.222 (Depositor), 0.220 (DCC) 
• R-Value Work: 
  0.180 (Depositor), 0.180 (DCC) 
• R-Value Observed: 
  0.182 (Depositor) 

Starting Model: in silico

Literature

Phytoplasma immunodominant membrane protein

Wang, H.C., Ko, T.P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 31.57 kDa 
• Atom Count: 2,404 
• Modeled Residue Count: 255 
• Deposited Residue Count: 282 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Immunodominant membrane protein	A, B	141	Peanut witches'-broom phytoplasma	Mutation(s): 0  Gene Names: imp
UniProt
Find proteins for E5D8B7 (Peanut witches'-broom phytoplasma) Explore E5D8B7  Go to UniProtKB:  E5D8B7

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.222 (Depositor), 0.220 (DCC) 
• R-Value Work:  0.180 (Depositor), 0.180 (DCC) 
• R-Value Observed: 0.182 (Depositor) 

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.533	α = 90
b = 96.533	β = 90
c = 54.188	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data collection
HKL-2000	data scaling
MOLREP	phasing
HKL-2000	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-05-08 
Deposition Author(s): Wang, H.C., Ko, T.P.

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Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, Taiwan)	Taiwan	MOST111-2628-B038-010

Revision History  

• Version 1.0: 2024-05-08
  Type: Initial release