Structure and function of YeeE-YeeD complex for sophisticated thiosulfate uptake
Ikei, M., Miyazaki, R., Monden, K., Naito, Y., Takeuchi, A., Takahashi, Y., Tanaka, Y., Ichikawa, M., Tsukazaki, T.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera) | A [auth B], B [auth A] | 460 | Spirochaeta thermophila DSM 6578, Corynebacterium pollutisoli | Mutation(s): 1  Gene Names: Spith_0734, SAMN06295981_0228, Spith_0735 | |
UniProt | |||||
Find proteins for A0A1X7HYM8 (Corynebacterium pollutisoli) Explore A0A1X7HYM8  Go to UniProtKB:  A0A1X7HYM8 | |||||
Find proteins for G0GAP6 (Spirochaeta thermophila (strain ATCC 700085 / DSM 6578 / Z-1203)) Explore G0GAP6  Go to UniProtKB:  G0GAP6 | |||||
Find proteins for G0GAP7 (Spirochaeta thermophila (strain ATCC 700085 / DSM 6578 / Z-1203)) Explore G0GAP7  Go to UniProtKB:  G0GAP7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | G0GAP7G0GAP6A0A1X7HYM8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
OLC Query on OLC | D [auth B] E [auth B] F [auth B] G [auth B] H [auth B] | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate C21 H40 O4 RZRNAYUHWVFMIP-GDCKJWNLSA-N | |||
THJ (Subject of Investigation/LOI) Query on THJ | C [auth B], O [auth A] | THIOSULFATE O3 S2 DHCDFWKWKRSZHF-UHFFFAOYSA-L |
Length ( Å ) | Angle ( ˚ ) |
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a = 73.98 | α = 90 |
b = 102.44 | β = 90 |
c = 186.52 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
Coot | model building |
XDS | data scaling |
PHASER | phasing |
XDS | data reduction |
Funding Organization | Location | Grant Number |
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Japan Society for the Promotion of Science (JSPS) | Japan | -- |
Japan Science and Technology | Japan | -- |
Ministry of Education, Culture, Sports, Science and Technology (Japan) | Japan | -- |