8J1F

GSK101 bound state of mTRPV4

PDB DOI: https://doi.org/10.2210/pdb8J1F/pdb
EM Map EMD-35921: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Mus musculus
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes PDBTMMemProtMDmpstruc

Deposited: 2023-04-12 Released: 2023-08-09
Deposition Author(s): Zhen, W.X., Yang, F.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.62 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural basis of ligand activation and inhibition in a mammalian TRPV4 ion channel.

Zhen, W., Zhao, Z., Chang, S., Chen, X., Wan, Y., Yang, F.

(2023) Cell Discov 9: 70-70

PubMed: 37429860 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/s41421-023-00579-3
Primary Citation of Related Structures:
8J1B, 8J1D, 8J1F, 8J1H, 8JKM

Organizational Affiliation

Department of Biophysics and Kidney Disease Center of the First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China.

Macromolecule Content

Total Structure Weight: 321.07 kDa
Atom Count: 19,116
Modelled Residue Count: 2,348
Deposited Residue Count: 2,800
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transient receptor potential cation channel subfamily V member 4	A, B, C, D	700	Mus musculus	Mutation(s): 0 Gene Names: Trpv4, Trp12, Vrl2, Vroac Membrane Entity: Yes
UniProt
Find proteins for Q9EPK8 (Mus musculus) Explore Q9EPK8 Go to UniProtKB: Q9EPK8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9EPK8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
XQ3 Query on XQ3 Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth B] SDF format, chain G [auth C] SDF format, chain H [auth D] MOL2 format, chain E [auth A] MOL2 format, chain F [auth B] MOL2 format, chain G [auth C] MOL2 format, chain H [auth D]	E [auth A], F [auth B], G [auth C], H [auth D]	N-[(2S)-1-{4-[N-(2,4-dichlorobenzene-1-sulfonyl)-L-seryl]piperazin-1-yl}-4-methyl-1-oxopentan-2-yl]-1-benzothiophene-2-carboxamide C₂₈ H₃₂ Cl₂ N₄ O₆ S₂ IVYQPSHHYIAUFO-VXKWHMMOSA-N		Interactions Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain H [auth D]