8J10 | pdb_00008j10

Crystal structure of horse spleen L-ferritin at -180deg Celsius cooled from -20deg Celsius.

PDB DOI: https://doi.org/10.2210/pdb8J10/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Equus caballus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-04-12 Released: 2023-05-03
Deposition Author(s): Maity, B., Tian, J., Abe, S., Ueno, T.
Funding Organization(s): Japan Society for the Promotion of Science (JSPS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free:
0.206 (Depositor), 0.214 (DCC)
R-Value Work:
0.180 (Depositor), 0.191 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Atomic-Level Insights into a Unique Semi-Clathrate Hydrate Formed in a Confined Environment of Porous Protein Crystal.

Maity, B., Tian, J., Furuta, T., Abe, S., Ueno, T.

(2023) Cryst Growth Des 23: 7448-7458

DOI: https://doi.org/10.1021/acs.cgd.3c00880

Macromolecule Content

Total Structure Weight: 20.88 kDa
Atom Count: 1,740
Modeled Residue Count: 173
Deposited Residue Count: 174
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferritin light chain	A [auth X]	174	Equus caballus	Mutation(s): 0 Gene Names: FTL
UniProt
Find proteins for P02791 (Equus caballus) Explore P02791 Go to UniProtKB: P02791
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02791
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CD Query on CD Download:Ideal Coordinates CCD File SDF format, chain D [auth X] SDF format, chain C [auth X] SDF format, chain B [auth X] MOL2 format, chain D [auth X] MOL2 format, chain C [auth X] MOL2 format, chain B [auth X] mmCIF format, chain D [auth X] mmCIF format, chain C [auth X] mmCIF format, chain B [auth X]	B [auth X], C [auth X], D [auth X]	CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N		Interactions Focus chain B [auth X] Focus chain C [auth X] Focus chain D [auth X] Interactions & Density Focus chain B [auth X] Focus chain C [auth X] Focus chain D [auth X]
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain I [auth X] SDF format, chain H [auth X] SDF format, chain G [auth X] SDF format, chain F [auth X] MOL2 format, chain I [auth X] MOL2 format, chain H [auth X] MOL2 format, chain G [auth X] MOL2 format, chain F [auth X] mmCIF format, chain I [auth X] mmCIF format, chain H [auth X] mmCIF format, chain G [auth X] mmCIF format, chain F [auth X]	F [auth X], G [auth X], H [auth X], I [auth X]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain F [auth X] Focus chain G [auth X] Focus chain H [auth X] Focus chain I [auth X] Interactions & Density Focus chain F [auth X] Focus chain G [auth X] Focus chain H [auth X] Focus chain I [auth X]
EDO Query on EDO Download:Ideal Coordinates CCD File SDF format, chain M [auth X] SDF format, chain L [auth X] SDF format, chain K [auth X] SDF format, chain J [auth X] MOL2 format, chain M [auth X] MOL2 format, chain L [auth X] MOL2 format, chain K [auth X] MOL2 format, chain J [auth X] mmCIF format, chain M [auth X] mmCIF format, chain L [auth X] mmCIF format, chain K [auth X] mmCIF format, chain J [auth X]	J [auth X], K [auth X], L [auth X], M [auth X]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain J [auth X] Focus chain K [auth X] Focus chain L [auth X] Focus chain M [auth X] Interactions & Density Focus chain J [auth X] Focus chain K [auth X] Focus chain L [auth X] Focus chain M [auth X]
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain E [auth X] MOL2 format, chain E [auth X] mmCIF format, chain E [auth X]	E [auth X]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain E [auth X] Interactions & Density Focus chain E [auth X]