8J0O

cryo-EM structure of human EMC and VDAC


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.32 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history



Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 1993Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N766 (Homo sapiens)
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PHAROS:  Q8N766
GTEx:  ENSG00000127463 
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UniProt GroupQ8N766
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 2297Homo sapiensMutation(s): 0 
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Find proteins for Q15006 (Homo sapiens)
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PHAROS:  Q15006
GTEx:  ENSG00000104412 
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UniProt GroupQ15006
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 3261Homo sapiensMutation(s): 0 
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Find proteins for Q9P0I2 (Homo sapiens)
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PHAROS:  Q9P0I2
GTEx:  ENSG00000125037 
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UniProt GroupQ9P0I2
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 4183Homo sapiensMutation(s): 0 
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Find proteins for Q5J8M3 (Homo sapiens)
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PHAROS:  Q5J8M3
GTEx:  ENSG00000128463 
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UniProt GroupQ5J8M3
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 5131Homo sapiensMutation(s): 0 
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Find proteins for Q8N4V1 (Homo sapiens)
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PHAROS:  Q8N4V1
GTEx:  ENSG00000169446 
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UniProt GroupQ8N4V1
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 6110Homo sapiensMutation(s): 0 
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Find proteins for Q9BV81 (Homo sapiens)
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PHAROS:  Q9BV81
GTEx:  ENSG00000127774 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 7242Homo sapiensMutation(s): 0 
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Find proteins for Q9NPA0 (Homo sapiens)
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PHAROS:  Q9NPA0
GTEx:  ENSG00000134153 
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UniProt GroupQ9NPA0
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 8210Homo sapiensMutation(s): 0 
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Find proteins for O43402 (Homo sapiens)
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GTEx:  ENSG00000131148 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
ER membrane protein complex subunit 10I [auth J]207Homo sapiensMutation(s): 0 
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Find proteins for Q5UCC4 (Homo sapiens)
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GTEx:  ENSG00000161671 
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UniProt GroupQ5UCC4
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Voltage-dependent anion-selective channel protein 1J [auth K]283Homo sapiensMutation(s): 0 
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Find proteins for P21796 (Homo sapiens)
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PHAROS:  P21796
GTEx:  ENSG00000213585 
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Oligosaccharides

Help

Entity ID: 11
MoleculeChains Length2D Diagram Glycosylation3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseK [auth L],
L [auth M],
M [auth N]
3N-Glycosylation
Glycosylation Resources
GlyTouCan:  G15407YE
GlyCosmos:  G15407YE
GlyGen:  G15407YE
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.32 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31930063

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-03
    Type: Initial release
  • Version 1.1: 2024-04-17
    Changes: Database references