8IJT | pdb_00008ijt

crystal structure of Hyp N135A mutant from Hypoxylon sp. E7406B

• PDB DOI: https://doi.org/10.2210/pdb8IJT/pdb

• Classification: TRANSFERASE
• Organism(s): Hypoxylon sp. E7406B
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2023-02-28 Released: 2024-02-28 
• Deposition Author(s): Gao, J., Su, L.Q., Li, Q., Han, X., Wei, H.L., Dai, Z.J., Liu, W.D.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.56 Å
• R-Value Free: 
  0.252 (Depositor), 0.282 (DCC) 
• R-Value Work: 
  0.201 (Depositor) 
• R-Value Observed: 
  0.203 (Depositor) 

Starting Model: in silico

Literature

crystal structure of Hyp N135A mutant from Hypoxylon sp. E7406B

Gao, J., Su, L.Q., Li, Q., Han, X., Wei, H.L., Dai, Z.J., Liu, W.D.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 166.67 kDa 
• Atom Count: 10,300 
• Modeled Residue Count: 1,299 
• Deposited Residue Count: 1,488 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Terpene synthase	A, B, C, D	372	Hypoxylon sp. E7406B	Mutation(s): 1  Gene Names: Hyp3

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.56 Å
• R-Value Free:  0.252 (Depositor), 0.282 (DCC) 
• R-Value Work:  0.201 (Depositor) 
• R-Value Observed: 0.203 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.872	α = 77.5
b = 86.23	β = 85.91
c = 102.349	γ = 87.69

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
Aimless	data scaling
PHENIX	phasing
autoPROC	data reduction

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2024-02-28 
Deposition Author(s): Gao, J., Su, L.Q., Li, Q., Han, X., Wei, H.L., Dai, Z.J., Liu, W.D.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2024-02-28
  Type: Initial release