8IJ7

Crystal structure of alcohol dehydrogenase from Burkholderia gladioli

PDB DOI: https://doi.org/10.2210/pdb8IJ7/pdb

Classification: OXIDOREDUCTASE
Organism(s): Burkholderia gladioli BSR3
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-02-26 Released: 2024-02-28
Deposition Author(s): Han, X., Mei, Z.L., Liu, W.D., Sun, Z.T., Ma, J.A.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.54 Å
R-Value Free: 0.294
R-Value Work: 0.246
R-Value Observed: 0.249

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of alcohol dehydrogenase from Burkholderia gladioli

Han, X., Mei, Z.L., Liu, W.D., Sun, Z.T., Ma, J.A.

To be published.

Macromolecule Content

Total Structure Weight: 103.52 kDa
Atom Count: 7,148
Modelled Residue Count: 995
Deposited Residue Count: 1,004
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative short-chain dehydrogenases/reductase family protein	A, B, C, D	251	Burkholderia gladioli BSR3	Mutation(s): 0 Gene Names: bgla_2g00620
UniProt
Find proteins for F2LIG4 (Burkholderia gladioli (strain BSR3)) Explore F2LIG4 Go to UniProtKB: F2LIG4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	F2LIG4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.54 Å
R-Value Free: 0.294
R-Value Work: 0.246
R-Value Observed: 0.249
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 108.402	α = 90
b = 109.407	β = 90
c = 217.463	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-02-28

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2024-02-28
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.