8IHE | pdb_00008ihe

Rv1122(gnd2) in Mycobacterium tuberculosis

PDB DOI: https://doi.org/10.2210/pdb8IHE/pdb

Classification: HYDROLASE
Organism(s): Mycobacterium tuberculosis H37Rv
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-02-22 Released: 2024-02-28
Deposition Author(s): Chen, Y.J., Su, D.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.74 Å
R-Value Free:
0.307 (Depositor), 0.306 (DCC)
R-Value Work:
0.216 (Depositor), 0.220 (DCC)
R-Value Observed:
0.221 (Depositor)

Starting Model: experimental
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This is version 1.0 of the entry. See complete history.

Literature

Rv1122(gnd2) in Mycobacterium tuberculosis

Chen, Y.J., Su, D.

To be published.

Macromolecule Content

Total Structure Weight: 145.6 kDa
Atom Count: 9,862
Modeled Residue Count: 1,312
Deposited Residue Count: 1,360
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable 6-phosphogluconate dehydrogenase,decarboxylating Gnd2	A, B, C, D	340	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: gnd2, Rv1122
UniProt
Find proteins for O06574 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore O06574 Go to UniProtKB: O06574
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O06574
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.74 Å
R-Value Free: 0.307 (Depositor), 0.306 (DCC)
R-Value Work: 0.216 (Depositor), 0.220 (DCC)
R-Value Observed: 0.221 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 95.991	α = 90
b = 107.246	β = 90
c = 137.023	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-02-28

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31670737

Revision History (Full details and data files)

Version 1.0: 2024-02-28
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.