8IGZ

Xcc NAMPT Quadruple mutant

PDB DOI: https://doi.org/10.2210/pdb8IGZ/pdb

Classification: TRANSFERASE
Organism(s): Xanthomonas campestris pv. campestris str. 8004
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2023-02-21 Released: 2024-02-28
Deposition Author(s): Xu, G.L., Ming, Z.H.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.11 Å
R-Value Free: 0.255
R-Value Work: 0.213
R-Value Observed: 0.216

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural insights into phytopathogenic bacterial NAD+ biosynthesis via the NAM salvage pathway

Xu, G.L., Ming, Z.

To be published.

Macromolecule Content

Total Structure Weight: 106.68 kDa
Atom Count: 6,837
Modelled Residue Count: 877
Deposited Residue Count: 964
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pre-B cell enhancing factor related protein	A, B	482	Xanthomonas campestris pv. campestris str. 8004	Mutation(s): 4 Gene Names: XC_0719
UniProt
Find proteins for A0A0H2X5R2 (Xanthomonas campestris pv. campestris (strain 8004)) Explore A0A0H2X5R2 Go to UniProtKB: A0A0H2X5R2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0H2X5R2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.11 Å
R-Value Free: 0.255
R-Value Work: 0.213
R-Value Observed: 0.216
Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 115.76	α = 90
b = 115.76	β = 90
c = 317.75	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data reduction
xia2	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-02-28

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2024-02-28
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.