8IFU | pdb_00008ifu

HcCCR in NaCl

PDB DOI: https://doi.org/10.2210/pdb8IFU/pdb
EM Map EMD-35423: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Hyphochytrium catenoides
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2023-02-19 Released: 2024-02-28
Deposition Author(s): Zhang, M.F.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8IFU

This is version 1.0 of the entry. See complete history.

Literature

Structure of HcCCR

Zhang, M.F.

To be published.

Macromolecule Content

Total Structure Weight: 97.11 kDa
Atom Count: 6,732
Modeled Residue Count: 777
Deposited Residue Count: 795
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HcCCR	A, B, C	265	Hyphochytrium catenoides	Mutation(s): 0

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
L9Q (Subject of Investigation/LOI) Query on L9Q Download:Ideal Coordinates CCD File SDF format, chain W [auth B] SDF format, chain V [auth A] SDF format, chain U [auth A] SDF format, chain QA [auth C] SDF format, chain PA [auth C] SDF format, chain OA [auth B] MOL2 format, chain W [auth B] MOL2 format, chain V [auth A] MOL2 format, chain U [auth A] MOL2 format, chain QA [auth C] MOL2 format, chain PA [auth C] MOL2 format, chain OA [auth B] mmCIF format, chain W [auth B] mmCIF format, chain V [auth A] mmCIF format, chain U [auth A] mmCIF format, chain QA [auth C] mmCIF format, chain PA [auth C] mmCIF format, chain OA [auth B]	OA [auth B] PA [auth C] QA [auth C] U [auth A] V [auth A] OA [auth B], PA [auth C], QA [auth C], U [auth A], V [auth A], W [auth B]	(1S)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate C₄₁ H₈₀ N O₈ P JQKOHRZNEOQNJE-VYCVAHKRSA-N		Interactions Focus chain OA [auth B] Focus chain PA [auth C] Focus chain QA [auth C] Focus chain U [auth A] Focus chain V [auth A] Focus chain W [auth B] Interactions & Density Focus chain OA [auth B] Focus chain PA [auth C] Focus chain QA [auth C] Focus chain U [auth A] Focus chain V [auth A] Focus chain W [auth B]
RET (Subject of Investigation/LOI) Query on RET Download:Ideal Coordinates CCD File SDF format, chain X [auth B] SDF format, chain RA [auth C] SDF format, chain D [auth A] MOL2 format, chain X [auth B] MOL2 format, chain RA [auth C] MOL2 format, chain D [auth A] mmCIF format, chain X [auth B] mmCIF format, chain RA [auth C] mmCIF format, chain D [auth A]	D [auth A], RA [auth C], X [auth B]	RETINAL C₂₀ H₂₈ O NCYCYZXNIZJOKI-OVSJKPMPSA-N		Interactions Focus chain D [auth A] Focus chain RA [auth C] Focus chain X [auth B] Interactions & Density Focus chain D [auth A] Focus chain RA [auth C] Focus chain X [auth B]
NA (Subject of Investigation/LOI) Query on NA Download:Ideal Coordinates CCD File SDF format, chain ZA [auth C] SDF format, chain Z [auth B] SDF format, chain YA [auth C] SDF format, chain Y [auth B] SDF format, chain XA [auth C] SDF format, chain WA [auth C] SDF format, chain VA [auth C] SDF format, chain UA [auth C] SDF format, chain TA [auth C] SDF format, chain T [auth A] SDF format, chain SA [auth C] SDF format, chain S [auth A] SDF format, chain R [auth A] SDF format, chain Q [auth A] SDF format, chain P [auth A] SDF format, chain O [auth A] SDF format, chain NA [auth B] SDF format, chain N [auth A] SDF format, chain MA [auth B] SDF format, chain M [auth A] SDF format, chain LA [auth B] SDF format, chain L [auth A] SDF format, chain KA [auth B] SDF format, chain K [auth A] SDF format, chain JA [auth B] SDF format, chain J [auth A] SDF format, chain IA [auth B] SDF format, chain I [auth A] SDF format, chain HB [auth C] SDF format, chain HA [auth B] SDF format, chain H [auth A] SDF format, chain GB [auth C] SDF format, chain GA [auth B] SDF format, chain G [auth A] SDF format, chain FB [auth C] SDF format, chain FA [auth B] SDF format, chain F [auth A] SDF format, chain EB [auth C] SDF format, chain EA [auth B] SDF format, chain E [auth A] SDF format, chain DB [auth C] SDF format, chain DA [auth B] SDF format, chain CB [auth C] SDF format, chain CA [auth B] SDF format, chain BB [auth C] SDF format, chain BA [auth B] SDF format, chain AB [auth C] SDF format, chain AA [auth B] MOL2 format, chain ZA [auth C] MOL2 format, chain Z [auth B] MOL2 format, chain YA [auth C] MOL2 format, chain Y [auth B] MOL2 format, chain XA [auth C] MOL2 format, chain WA [auth C] MOL2 format, chain VA [auth C] MOL2 format, chain UA [auth C] MOL2 format, chain TA [auth C] MOL2 format, chain T [auth A] MOL2 format, chain SA [auth C] MOL2 format, chain S [auth A] MOL2 format, chain R [auth A] MOL2 format, chain Q [auth A] MOL2 format, chain P [auth A] MOL2 format, chain O [auth A] MOL2 format, chain NA [auth B] MOL2 format, chain N [auth A] MOL2 format, chain MA [auth B] MOL2 format, chain M [auth A] MOL2 format, chain LA [auth B] MOL2 format, chain L [auth A] MOL2 format, chain KA [auth B] MOL2 format, chain K [auth A] MOL2 format, chain JA [auth B] MOL2 format, chain J [auth A] MOL2 format, chain IA [auth B] MOL2 format, chain I [auth A] MOL2 format, chain HB [auth C] MOL2 format, chain HA [auth B] MOL2 format, chain H [auth A] MOL2 format, chain GB [auth C] MOL2 format, chain GA [auth B] MOL2 format, chain G [auth A] MOL2 format, chain FB [auth C] MOL2 format, chain FA [auth B] MOL2 format, chain F [auth A] MOL2 format, chain EB [auth C] MOL2 format, chain EA [auth B] MOL2 format, chain E [auth A] MOL2 format, chain DB [auth C] MOL2 format, chain DA [auth B] MOL2 format, chain CB [auth C] MOL2 format, chain CA [auth B] MOL2 format, chain BB [auth C] MOL2 format, chain BA [auth B] MOL2 format, chain AB [auth C] MOL2 format, chain AA [auth B] mmCIF format, chain ZA [auth C] mmCIF format, chain Z [auth B] mmCIF format, chain YA [auth C] mmCIF format, chain Y [auth B] mmCIF format, chain XA [auth C] mmCIF format, chain WA [auth C] mmCIF format, chain VA [auth C] mmCIF format, chain UA [auth C] mmCIF format, chain TA [auth C] mmCIF format, chain T [auth A] mmCIF format, chain SA [auth C] mmCIF format, chain S [auth A] mmCIF format, chain R [auth A] mmCIF format, chain Q [auth A] mmCIF format, chain P [auth A] mmCIF format, chain O [auth A] mmCIF format, chain NA [auth B] mmCIF format, chain N [auth A] mmCIF format, chain MA [auth B] mmCIF format, chain M [auth A] mmCIF format, chain LA [auth B] mmCIF format, chain L [auth A] mmCIF format, chain KA [auth B] mmCIF format, chain K [auth A] mmCIF format, chain JA [auth B] mmCIF format, chain J [auth A] mmCIF format, chain IA [auth B] mmCIF format, chain I [auth A] mmCIF format, chain HB [auth C] mmCIF format, chain HA [auth B] mmCIF format, chain H [auth A] mmCIF format, chain GB [auth C] mmCIF format, chain GA [auth B] mmCIF format, chain G [auth A] mmCIF format, chain FB [auth C] mmCIF format, chain FA [auth B] mmCIF format, chain F [auth A] mmCIF format, chain EB [auth C] mmCIF format, chain EA [auth B] mmCIF format, chain E [auth A] mmCIF format, chain DB [auth C] mmCIF format, chain DA [auth B] mmCIF format, chain CB [auth C] mmCIF format, chain CA [auth B] mmCIF format, chain BB [auth C] mmCIF format, chain BA [auth B] mmCIF format, chain AB [auth C] mmCIF format, chain AA [auth B]	AA [auth B] AB [auth C] BA [auth B] BB [auth C] CA [auth B] AA [auth B], AB [auth C], BA [auth B], BB [auth C], CA [auth B], CB [auth C], DA [auth B], DB [auth C], E [auth A], EA [auth B], EB [auth C], F [auth A], FA [auth B], FB [auth C], G [auth A], GA [auth B], GB [auth C], H [auth A], HA [auth B], HB [auth C], I [auth A], IA [auth B], J [auth A], JA [auth B], K [auth A], KA [auth B], L [auth A], LA [auth B], M [auth A], MA [auth B], N [auth A], NA [auth B], O [auth A], P [auth A], Q [auth A], R [auth A], S [auth A], SA [auth C], T [auth A], TA [auth C], UA [auth C], VA [auth C], WA [auth C], XA [auth C], Y [auth B], YA [auth C], Z [auth B], ZA [auth C]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain AA [auth B] Focus chain AB [auth C] Focus chain BA [auth B] Focus chain BB [auth C] Focus chain CA [auth B] Focus chain CB [auth C] Focus chain DA [auth B] Focus chain DB [auth C] Focus chain E [auth A] Focus chain EA [auth B] Focus chain EB [auth C] Focus chain F [auth A] Focus chain FA [auth B] Focus chain FB [auth C] Focus chain G [auth A] Focus chain GA [auth B] Focus chain GB [auth C] Focus chain H [auth A] Focus chain HA [auth B] Focus chain HB [auth C] Focus chain I [auth A] Focus chain IA [auth B] Focus chain J [auth A] Focus chain JA [auth B] Focus chain K [auth A] Focus chain KA [auth B] Focus chain L [auth A] Focus chain LA [auth B] Focus chain M [auth A] Focus chain MA [auth B] Focus chain N [auth A] Focus chain NA [auth B] Focus chain O [auth A] Focus chain P [auth A] Focus chain Q [auth A] Focus chain R [auth A] Focus chain S [auth A] Focus chain SA [auth C] Focus chain T [auth A] Focus chain TA [auth C] Focus chain UA [auth C] Focus chain VA [auth C] Focus chain WA [auth C] Focus chain XA [auth C] Focus chain Y [auth B] Focus chain YA [auth C] Focus chain Z [auth B] Focus chain ZA [auth C] Interactions & Density Focus chain AA [auth B] Focus chain AB [auth C] Focus chain BA [auth B] Focus chain BB [auth C] Focus chain CA [auth B] Focus chain CB [auth C] Focus chain DA [auth B] Focus chain DB [auth C] Focus chain E [auth A] Focus chain EA [auth B] Focus chain EB [auth C] Focus chain F [auth A] Focus chain FA [auth B] Focus chain FB [auth C] Focus chain G [auth A] Focus chain GA [auth B] Focus chain GB [auth C] Focus chain H [auth A] Focus chain HA [auth B] Focus chain HB [auth C] Focus chain I [auth A] Focus chain IA [auth B] Focus chain J [auth A] Focus chain JA [auth B] Focus chain K [auth A] Focus chain KA [auth B] Focus chain L [auth A] Focus chain LA [auth B] Focus chain M [auth A] Focus chain MA [auth B] Focus chain N [auth A] Focus chain NA [auth B] Focus chain O [auth A] Focus chain P [auth A] Focus chain Q [auth A] Focus chain R [auth A] Focus chain S [auth A] Focus chain SA [auth C] Focus chain T [auth A] Focus chain TA [auth C] Focus chain UA [auth C] Focus chain VA [auth C] Focus chain WA [auth C] Focus chain XA [auth C] Focus chain Y [auth B] Focus chain YA [auth C] Focus chain Z [auth B] Focus chain ZA [auth C]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.37 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-02-28

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2024-02-28
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.