8I9M | pdb_00008i9m

The RAGE and HMGB1 complex

• PDB DOI: https://doi.org/10.2210/pdb8I9M/pdb
• EM Map EMD-35276: EMDB EMDataResource

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-02-07 Released: 2024-02-14 
• Deposition Author(s): Han, C.W., Kim, H.J.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 5.19 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

The RAGE and HMGB1 complex

Han, C.W., Kim, H.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 31.66 kDa 
• Atom Count: 2,227 
• Modeled Residue Count: 286 
• Deposited Residue Count: 286 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
High mobility group protein B1	A	75	Homo sapiens	Mutation(s): 0  Gene Names: HMGB1, HMG1
UniProt & NIH Common Fund Data Resources
Find proteins for P09429 (Homo sapiens) Explore P09429  Go to UniProtKB:  P09429
PHAROS:  P09429 GTEx:  ENSG00000189403

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Advanced glycosylation end product-specific receptor	B	211	Homo sapiens	Mutation(s): 0  Gene Names: AGER, RAGE
UniProt & NIH Common Fund Data Resources
Find proteins for Q15109 (Homo sapiens) Explore Q15109  Go to UniProtKB:  Q15109
PHAROS:  Q15109 GTEx:  ENSG00000204305

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 5.19 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-02-14 
Deposition Author(s): Han, C.W., Kim, H.J.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-02-14
  Type: Initial release
  
• Version 1.1: 2024-11-06
  Changes: Data collection, Structure summary