8I93 | pdb_00008i93

ACE2-B0AT1 complex bound with methionine

PDB DOI: https://doi.org/10.2210/pdb8I93/pdb
EM Map EMD-35256: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes PDBTM MemProtMD mpstruc

Deposited: 2023-02-06 Released: 2023-09-27
Deposition Author(s): Li, Y.N., Zhang, Y.Y., Shen, Y.P., Yan, R.H.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural insight into the substrate recognition and transport mechanism of amino acid transporter complex ACE2-B 0 AT1 and ACE2-SIT1.

Li, Y., Chen, Y., Zhang, Y., Shen, Y., Xu, K., Liu, Y., Wang, Z., Yan, R.

(2023) Cell Discov 9: 93-93

PubMed: 37684251 Search on PubMed Search on PubMed Central
DOI: https://doi.org/10.1038/s41421-023-00596-2
Primary Citation Related Structures:
8I91, 8I92, 8I93

Organizational Affiliation

Center for Infectious Disease Research, Westlake Laboratory of Life Sciences and Biomedicine, Key Laboratory of Structural Biology of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China.

Macromolecule Content

Total Structure Weight: 327.93 kDa
Atom Count: 22,342
Modeled Residue Count: 2,708
Deposited Residue Count: 2,804
Unique protein chains: 2

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Angiotensin-converting enzyme 2	A, C	749	Homo sapiens	Mutation(s): 0 Gene Names: ACE2 EC: 3.4.17 (UniProt), 3.4.17.23 (UniProt) Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYF1 (Homo sapiens) Explore Q9BYF1 Go to UniProtKB: Q9BYF1
PHAROS: Q9BYF1 GTEx: ENSG00000130234
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9BYF1
Glycosylation
Glycosylation Sites: 7	Glycosylation Focus chain A Focus chain C	Go to GlyGen: Q9BYF1-1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Sodium-dependent neutral amino acid transporter B(0)AT1	B, D	653	Homo sapiens	Mutation(s): 0 Gene Names: SLC6A19 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q695T7 (Homo sapiens) Explore Q695T7 Go to UniProtKB: Q695T7
PHAROS: Q695T7 GTEx: ENSG00000174358
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q695T7
Glycosylation
Glycosylation Sites: 5	Glycosylation Focus chain B Focus chain D	Go to GlyGen: Q695T7-1
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Help

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	E, F, G, H, I E, F, G, H, I, J, K, L, M, N, O, P, Q, R	2		N-Glycosylation	Interactions Focus chain E Focus chain F Focus chain G Focus chain H Focus chain I Focus chain J Focus chain K Focus chain L Focus chain M Focus chain N Focus chain O Focus chain P Focus chain Q Focus chain R Interactions & Density Focus chain E Focus chain F Focus chain G Focus chain H Focus chain I Focus chain J Focus chain K Focus chain L Focus chain M Focus chain N Focus chain O Focus chain P Focus chain Q Focus chain R
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG (Subject of Investigation/LOI) Query on NAG Download:Ideal Coordinates CCD File SDF format, chain DA [auth D] SDF format, chain V [auth B] SDF format, chain W [auth B] SDF format, chain X [auth B] SDF format, chain Z [auth C] SDF format, chain Y [auth B] SDF format, chain S [auth A] SDF format, chain FA [auth D] SDF format, chain EA [auth D] SDF format, chain CA [auth D] MOL2 format, chain DA [auth D] MOL2 format, chain V [auth B] MOL2 format, chain W [auth B] MOL2 format, chain X [auth B] MOL2 format, chain Z [auth C] MOL2 format, chain Y [auth B] MOL2 format, chain S [auth A] MOL2 format, chain FA [auth D] MOL2 format, chain EA [auth D] MOL2 format, chain CA [auth D] mmCIF format, chain DA [auth D] mmCIF format, chain V [auth B] mmCIF format, chain W [auth B] mmCIF format, chain X [auth B] mmCIF format, chain Z [auth C] mmCIF format, chain Y [auth B] mmCIF format, chain S [auth A] mmCIF format, chain FA [auth D] mmCIF format, chain EA [auth D] mmCIF format, chain CA [auth D]	CA [auth D] DA [auth D] EA [auth D] FA [auth D] S [auth A] CA [auth D], DA [auth D], EA [auth D], FA [auth D], S [auth A], V [auth B], W [auth B], X [auth B], Y [auth B], Z [auth C]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain CA [auth D] Focus chain DA [auth D] Focus chain EA [auth D] Focus chain FA [auth D] Focus chain S [auth A] Focus chain V [auth B] Focus chain W [auth B] Focus chain X [auth B] Focus chain Y [auth B] Focus chain Z [auth C] Interactions & Density Focus chain CA [auth D] Focus chain DA [auth D] Focus chain EA [auth D] Focus chain FA [auth D] Focus chain S [auth A] Focus chain V [auth B] Focus chain W [auth B] Focus chain X [auth B] Focus chain Y [auth B] Focus chain Z [auth C]
MET (Subject of Investigation/LOI) Query on MET Download:Ideal Coordinates CCD File SDF format, chain U [auth B] SDF format, chain BA [auth D] MOL2 format, chain U [auth B] MOL2 format, chain BA [auth D] mmCIF format, chain U [auth B] mmCIF format, chain BA [auth D]	BA [auth D], U [auth B]	METHIONINE C₅ H₁₁ N O₂ S FFEARJCKVFRZRR-BYPYZUCNSA-N		Interactions Focus chain BA [auth D] Focus chain U [auth B] Interactions & Density Focus chain BA [auth D] Focus chain U [auth B]
ZN (Subject of Investigation/LOI) Query on ZN Download:Ideal Coordinates CCD File SDF format, chain AA [auth C] SDF format, chain T [auth A] MOL2 format, chain AA [auth C] MOL2 format, chain T [auth A] mmCIF format, chain AA [auth C] mmCIF format, chain T [auth A]	AA [auth C], T [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain AA [auth C] Focus chain T [auth A] Interactions & Density Focus chain AA [auth C] Focus chain T [auth A]