8I7E | pdb_00008i7e

Crystal structure of Glyceraldehyde 3-phosphate dehydrogenase from Salmonella typhi at 2.05A

PDB DOI: https://doi.org/10.2210/pdb8I7E/pdb

Classification: OXIDOREDUCTASE
Organism(s): Salmonella enterica subsp. enterica serovar Typhi
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-01-31 Released: 2023-09-06
Deposition Author(s): Kumar, N., Dilawari, R., Chaubey, G.K., Modanwal, R., Talukdar, S., Dhiman, A., Chaudhary, S., Patidar, A., Kumar, A., Raje, C.I., Raje, M., Kumaran, S.
Funding Organization(s): Council of Scientific & Industrial Research (CSIR), Indian Council of Medical Research, Department of Biotechnology (DBT, India)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free:
0.291 (Depositor), 0.299 (DCC)
R-Value Work:
0.244 (Depositor), 0.256 (DCC)
R-Value Observed:
0.247 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of Glyceraldehyde 3-phosphate dehydrogenase from Salmonella typhi at 2.05A

Kumar, N., Dilawari, R., Chaubey, G.K., Modanwal, R., Talukdar, S., Dhiman, A., Chaudhary, S., Patidar, A., Kumar, A., Raje, C.I., Raje, M., Kumaran, S.

To be published.

Macromolecule Content

Total Structure Weight: 71.26 kDa
Atom Count: 5,111
Modeled Residue Count: 661
Deposited Residue Count: 662
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glyceraldehyde-3-phosphate dehydrogenase	A, B	331	Salmonella enterica subsp. enterica serovar Typhi	Mutation(s): 0 Gene Names: gapA_2 EC: 1.2.1.12
UniProt
Find proteins for P0A1P0 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore P0A1P0 Go to UniProtKB: P0A1P0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A1P0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.291 (Depositor), 0.299 (DCC)
R-Value Work: 0.244 (Depositor), 0.256 (DCC)
R-Value Observed: 0.247 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 90.901	α = 90
b = 107.952	β = 90
c = 122.57	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PHENIX	refinement
xia2	data reduction
xia2	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-09-06

Deposition Author(s):

Funding Organization	Location	Grant Number
Council of Scientific & Industrial Research (CSIR)	India	--
Indian Council of Medical Research	India	--
Department of Biotechnology (DBT, India)	India	--

Revision History (Full details and data files)

Version 1.0: 2023-09-06
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.