8I4C | pdb_00008i4c

Cryo-EM structure of U46619-bound ABCC4

PDB DOI: https://doi.org/10.2210/pdb8I4C/pdb
EM Map EMD-35169: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes OPM PDBTM MemProtMD mpstruc

Deposited: 2023-01-19 Released: 2023-05-24
Deposition Author(s): Chen, Y., Wang, L., Hou, W.T., Zhou, C.Z., Chen, Y., Li, Q.
Funding Organization(s): Ministry of Science and Technology (MoST, China), Chinese Academy of Sciences

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8I4C

This is version 1.1 of the entry. See complete history.

Literature

Cryo-EM structure ofABCC4

Chen, Y., Wang, L., Hou, W.T., Zhou, C.Z., Chen, Y., Li, Q.

(2023) Nat Cardiovasc Res

Macromolecule Content

Total Structure Weight: 150.04 kDa
Atom Count: 9,752
Modeled Residue Count: 1,218
Deposited Residue Count: 1,325
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP-binding cassette sub-family C member 4	A	1,325	Homo sapiens	Mutation(s): 0 Gene Names: ABCC4, MOATB, MRP4 EC: 7.6.2 (PDB Primary Data), 7.6.2.2 (PDB Primary Data), 7.6.2.3 (PDB Primary Data) Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for O15439 (Homo sapiens) Explore O15439 Go to UniProtKB: O15439
PHAROS: O15439 GTEx: ENSG00000125257
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O15439
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PUC (Subject of Investigation/LOI) Query on PUC Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	(5Z)-7-{(1R,4S,5S,6R)-6-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-2-oxabicyclo[2.2.1]hept-5-yl}hept-5-enoic acid C₂₁ H₃₄ O₄ LQANGKSBLPMBTJ-BRSNVKEHSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.08 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.18.2_3874:

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-05-24

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	2019YFA0508500
Chinese Academy of Sciences	China	XDB37020202

Revision History (Full details and data files)

Version 1.0: 2023-05-24
Type: Initial release
Version 1.1: 2024-07-03
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.