8I3E

Crystal structure of ELKS1 in complex with Piccolo

  • Classification: PROTEIN BINDING
  • Organism(s): Rattus norvegicus, Mus musculus
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2023-01-17 Released: 2024-01-24 
  • Deposition Author(s): Cai, Q., Zhang, M.
  • Funding Organization(s): National Natural Science Foundation of China (NSFC), Ministry of Science and Technology (MoST, China), The University Grants Committee, Research Grants Council (RGC), Human Frontier Science Program (HFSP)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.245 
  • R-Value Observed: 0.248 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Short-distance vesicle transport via phase separation

Qiu, H., Wu, X., Cai, Q., Ganzella, M., Jahn, R., Zhang, M.

To be published.

Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ELKS/Rab6-interacting/CAST family member 1
A, B
146Rattus norvegicusMutation(s): 0 
Gene Names: Erc1
UniProt
Find proteins for Q811U3 (Rattus norvegicus)
Explore Q811U3 
Go to UniProtKB:  Q811U3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ811U3
Sequence Annotations
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  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
MKIAA0559 protein91Mus musculusMutation(s): 0 
Gene Names: Pclo, mKIAA0559
UniProt
Find proteins for S4R2E0 (Mus musculus)
Explore S4R2E0 
Go to UniProtKB:  S4R2E0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupS4R2E0
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.245 
  • R-Value Observed: 0.248 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 110.379α = 90
b = 46.111β = 110.438
c = 84.359γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
Arcimboldophasing

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China82188101
Ministry of Science and Technology (MoST, China)China2019YFA0508402
The University Grants Committee, Research Grants Council (RGC)Hong KongAoE-M09-12
The University Grants Committee, Research Grants Council (RGC)Hong Kong16104518
The University Grants Committee, Research Grants Council (RGC)Hong Kong16101419
Human Frontier Science Program (HFSP)FranceRGP0020/2019

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-24
    Type: Initial release