8HZ2

Tumor Necrosis Factor Receptor Associated Factor 6 (TRAF6) N-terminal Domain

• PDB DOI: https://doi.org/10.2210/pdb8HZ2/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2023-01-07 Released: 2023-01-25 
• Deposition Author(s): Guven, O., Ciftci, H., DeMirci, H.
• Funding Organization(s): Other government

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.409 
• R-Value Work: 0.348 
• R-Value Observed: 0.354 

Literature

Tumor Necrosis Factor Receptor Associated Factor 6 (TRAF6) N-terminal Domain

Guven, O., Ciftci, H., DeMirci, H.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: native gel electrophoresis

Macromolecule Content

• Total Structure Weight: 36.99 kDa 
• Atom Count: 2,574 
• Modelled Residue Count: 314 
• Deposited Residue Count: 314 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TNF receptor-associated factor 6	A, B	157	Homo sapiens	Mutation(s): 0  Gene Names: TRAF6, RNF85 EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y4K3 (Homo sapiens) Explore Q9Y4K3  Go to UniProtKB:  Q9Y4K3
PHAROS:  Q9Y4K3 GTEx:  ENSG00000175104

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN (Subject of Investigation/LOI)	C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], H [auth B], I [auth B], J [auth B], K [auth B], L [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.409 
• R-Value Work: 0.348 
• R-Value Observed: 0.354 
• Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.885	α = 91.04
b = 51.705	β = 112.15
c = 54.3	γ = 108.43

Software Package:

Software Name	Purpose
PHENIX	refinement
CrysalisPro	data reduction
CrysalisPro	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-01-25 
Deposition Author(s): Guven, O., Ciftci, H., DeMirci, H.

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Funding Organization	Location	Grant Number
Other government		--

Revision History  

• Version 1.0: 2023-01-25
  Type: Initial release