8HXK | pdb_00008hxk

BANAL-20-236 S1 in complex with R. Affinis ACE2

• PDB DOI: https://doi.org/10.2210/pdb8HXK/pdb
• EM Map EMD-35079: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): Rhinolophus affinis, unclassified Orthocoronavirinae
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2023-01-04 Released: 2024-01-10 
• Deposition Author(s): Wang, X., Xu, G.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.80 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

The selective effect of fecal-oral transmission on the S proteins of bat SARS-CoV-2 related coronaviruses in favor of stability over infectivity

Wang, X., Xu, G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 220.21 kDa 
• Atom Count: 10,340 
• Modeled Residue Count: 1,273 
• Deposited Residue Count: 1,944 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Angiotensin-converting enzyme	A	662	Rhinolophus affinis	Mutation(s): 0  EC: 3.4
UniProt
Find proteins for A0A7D7J6S6 (Rhinolophus affinis) Explore A0A7D7J6S6  Go to UniProtKB:  A0A7D7J6S6
Glycosylation
Glycosylation Sites: 5

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Spike glycoprotein	B	1,282	unclassified Orthocoronavirinae	Mutation(s): 0
Glycosylation
Glycosylation Sites: 2

Oligosaccharides

Help

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	C, D	2		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT GlyCosmos:  G42666HT GlyGen:  G42666HT

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	E [auth A], F [auth A], G [auth A], H [auth A], I [auth B]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.80 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-01-10 
Deposition Author(s): Wang, X., Xu, G.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-01-10
  Type: Initial release
  
• Version 1.1: 2024-10-16
  Changes: Data collection, Structure summary