8HVS | pdb_00008hvs

Solution Structure of the Antimicrobial Peptide HT-2

  • Classification: ANTIBIOTIC
  • Organism(s): synthetic construct
  • Mutation(s): No 

  • Deposited: 2022-12-27 Released: 2023-10-25 
  • Deposition Author(s): Li, S., Yang, A.
  • Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Design and evaluation of tadpole-like conformational antimicrobial peptides.

Tang, Z.Jiang, W.Li, S.Huang, X.Yang, Y.Chen, X.Qiu, J.Xiao, C.Xie, Y.Zhang, X.Li, J.Verma, C.S.He, Y.Yang, A.

(2023) Commun Biol 6: 1177-1177

  • DOI: https://doi.org/10.1038/s42003-023-05560-0
  • Primary Citation Related Structures: 
    8HVS

  • PubMed Abstract: 

    Antimicrobial peptides are promising alternatives to conventional antibiotics. Herein, we report a class of "tadpole-like" peptides consisting of an amphipathic α-helical head and an aromatic tail. A structure-activity relationship (SAR) study of "tadpole-like" temporin-SHf and its analogs revealed that increasing the number of aromatic residues in the tail, introducing Arg to the α-helical head and rearranging the peptide topology dramatically increased antimicrobial activity. Through progressive structural optimization, we obtained two peptides, HT2 and RI-HT2, which exhibited potent antimicrobial activity, no hemolytic activity and cytotoxicity, and no propensity to induce resistance. NMR and molecular dynamics simulations revealed that both peptides indeed adopted "tadpole-like" conformations. Fluorescence experiments and electron microscopy confirmed the membrane targeting mechanisms of the peptides. Our studies not only lead to the discovery of a series of ultrashort peptides with potent broad-spectrum antimicrobial activities, but also provide a new strategy for rational design of novel "tadpole-like" antimicrobial peptides.


  • Organizational Affiliation
    • Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, 400714, China.

Macromolecule Content 

  • Total Structure Weight: 1.45 kDa 
  • Atom Count: 104 
  • Modeled Residue Count: 10 
  • Deposited Residue Count: 10 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ARG-PHE-LEU-ARG-ARG-ILE-PHE-PHE-PHE-PHE10synthetic constructMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32170185
National Natural Science Foundation of China (NSFC)China91854101

Revision History  (Full details and data files)

  • Version 1.0: 2023-10-25
    Type: Initial release
  • Version 1.1: 2024-01-03
    Changes: Database references, Source and taxonomy
  • Version 1.2: 2024-05-15
    Changes: Database references